Co-expression analysis

Gene ID	Ta.20649.1.S1_a_at
Gene name
Homology with Arabidopsis	Similar to At1g68020: ATTPS6 (HF=7e-11)
Module size	22 genes
NF	0.55
%ile	81.5

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.69	86.9	0.85	Ta.20649.1.S1_a_at	BU100263	-	-	7e-11	At1g68020	ATTPS6	O.I.	H.G.	S.X.	Please select
0.73	89.1	0.88	TaAffx.90102.1.S1_at	BQ608389	-	-	2e+0	At3g07110	60S ribosomal protein L13A (RPL13aA)	O.I.	H.G.	S.X.	Please select
0.70	87.2	0.93	Ta.9329.1.S1_at	BQ166774	-	-	2e-2	At5g23950	C2 domain-containing protein	O.I.	H.G.	S.X.	Please select
0.68	86.5	0.86	Ta.4204.1.S1_at	CA710054	starch branching enzyme IIb	-	3e+0	At5g45775	60S ribosomal protein L11 (RPL11D)	O.I.	H.G.	S.X.	Please select
0.67	86.3	0.88	Ta.1278.1.S1_at	BQ167436	-	-	3e-1	At2g23310	ATRER1C1	O.I.	H.G.	S.X.	Please select
0.67	86.3	0.89	Ta.6493.1.S1_s_at	BJ217296	-	-	1e-18	At3g46920	protein kinase family protein	O.I.	H.G.	S.X.	Please select
0.64	83.6	0.90	Ta.6222.2.S1_at	BJ211810	-	-	8e-11	At3g20800	rcd1-like cell differentiation protein, putative	O.I.	H.G.	S.X.	Please select
0.64	83.6	0.87	Ta.13634.1.S1_at	BQ171936	-	-	9e+0	At5g25570	unknown protein	O.I.	H.G.	S.X.	Please select
0.63	83.1	0.88	Ta.19138.1.S1_at	CA647763	-	-	9e+0	At5g22530	unknown protein	O.I.	H.G.	S.X.	Please select
0.62	82.3	0.89	Ta.11883.1.S1_at	BQ170986	-	-	1e-1	At3g29000	calcium-binding EF hand family protein	O.I.	H.G.	S.X.	Please select
0.60	81.0	0.89	Ta.1509.1.S1_s_at	BJ239965	-	-	3e+0	At1g28200	FIP1 (FH INTERACTING PROTEIN 1)	O.I.	H.G.	S.X.	Please select
0.57	79.2	0.88	Ta.21962.1.S1_at	CA712162	-	-	6e+0	At5g15460	MUB2 (MEMBRANE-ANCHORED UBIQUITIN-FOLD PROTEIN 2)	O.I.	H.G.	S.X.	Please select
0.55	76.8	0.90	Ta.39.1.S1_x_at	AF076679.1	starch branching enyzyme 1	-	4e-4	At5g03650	SBE2.2 (starch branching enzyme 2.2)	O.I.	H.G.	S.X.	Please select
0.53	74.9	0.88	Ta.6222.1.S1_x_at	CK203178	-	-	2e-11	At3g20800	rcd1-like cell differentiation protein, putative	O.I.	H.G.	S.X.	Please select
0.48	69.0	0.87	Ta.6493.3.S1_a_at	CA593910	-	-	4e-3	At3g46920	protein kinase family protein	O.I.	H.G.	S.X.	Please select
0.47	67.9	0.89	Ta.7837.2.S1_at	CA699914	-	-	2e+0	At1g62981	unknown protein	O.I.	H.G.	S.X.	Please select
0.46	66.8	0.90	Ta.7002.1.S1_at	CD913131	-	-	2e-2	At1g09575	unknown protein	O.I.	H.G.	S.X.	Please select
0.46	66.8	0.87	TaAffx.12746.2.S1_at	BJ232399	-	-	2e+1	At5g60330	unknown protein	O.I.	H.G.	S.X.	Please select
0.46	66.8	0.88	Ta.7837.2.S1_x_at	CA699914	-	-	2e+0	At1g62981	unknown protein	O.I.	H.G.	S.X.	Please select
0.34	48.1	0.93	Ta.10900.1.S1_at	BQ166789	-	-	3e-13	At2g03890	phosphatidylinositol 3- and 4-kinase family protein	O.I.	H.G.	S.X.	Please select
0.34	48.1	0.88	Ta.6205.1.S1_at	CD895236	-	-	8e-7	At1g62710	BETA-VPE (BETA VACUOLAR PROCESSING ENZYME)	O.I.	H.G.	S.X.	Please select
0.27	35.6	0.96	TaAffx.92998.1.S1_at	BJ241994	-	-	2e-3	At5g45550	mob1/phocein family protein	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
16.7	99.6	GSM314288	tissue type: 22 DAP endosperm - rep2	GSE12508	Transcription patterns during wheat development
16.7	99.6	GSM315203	target strand labeled: Antisense - rep1	GSE12528	Wheat "Chinese Spring" natural antisense transcription survey
16.6	99.6	GSM314287	tissue type: 22 DAP endosperm - rep1	GSE12508	Transcription patterns during wheat development
15.9	99.6	GSM314289	tissue type: 22 DAP endosperm - rep3	GSE12508	Transcription patterns during wheat development
3.4	95.2	GSM298092	Crown tissue of Solstice at 3 weeks post germination	GSE11774	Expression data from cold treated wheat cultivars
2.9	94.0	GSM314273	tissue type: floral bracts, before anthesis - rep2	GSE12508	Transcription patterns during wheat development
2.8	93.6	GSM314269	tissue type: immature inflorescence - rep1	GSE12508	Transcription patterns during wheat development
2.7	93.3	GSM298067	Leaf tissue of Paragon at 5 weeks post germination, biological rep 1	GSE11774	Expression data from cold treated wheat cultivars
2.6	92.9	GSM139914	Anther pre-meiosis rep2	GSE6027	Microarray expression analysis of meiosis and microsporogenesis in hexaploid bread wheat
2.5	92.5	GSM139923	Anther telophaseI-telophaseII rep2	GSE6027	Microarray expression analysis of meiosis and microsporogenesis in hexaploid bread wheat

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Vitis_vinifera

Zea_mays

Back to the CoP portal site

Back to the KAGIANA project homepage