Co-expression analysis

Gene ID	Ta.2059.2.S1_a_at
Gene name
Homology with Arabidopsis	Similar to At5g65620: peptidase M3 family protein / thimet oligopeptidase family protein (HF=4e-22)
Module size	24 genes
NF	0.32
%ile	52.7

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.78	91.1	0.95	Ta.2059.2.S1_a_at	CD896628	-	-	4e-22	At5g65620	peptidase M3 family protein / thimet oligopeptidase family protein	O.I.	H.G.	S.X.	Please select
0.46	66.8	0.96	Ta.6666.1.S1_s_at	BQ170970	-	-	1e-11	At3g49420	Got1-like family protein	O.I.	H.G.	S.X.	Please select
0.38	54.7	0.96	Ta.22112.1.S1_at	CA656254	-	-	2e-4	At3g56740	ubiquitin-associated (UBA)/TS-N domain-containing protein	O.I.	H.G.	S.X.	Please select
0.38	54.7	0.97	Ta.20446.1.S1_at	BJ320690	-	-	3e-5	At1g16570	glycosyl transferase family 1 protein	O.I.	H.G.	S.X.	Please select
0.37	53.0	0.96	Ta.3610.1.A1_at	CK153151	-	-	1e+0	At4g01640	-	O.I.	H.G.	S.X.	Please select
0.37	53.0	0.96	TaAffx.9142.1.S1_at	CA610746	-	-	3e+1	At5g35631	unknown protein	O.I.	H.G.	S.X.	Please select
0.37	53.0	0.97	Ta.13399.2.A1_at	CK199486	-	-	2e+1	At5g25415	unknown protein	O.I.	H.G.	S.X.	Please select
0.35	49.8	0.96	Ta.9307.1.S1_a_at	CA641835	-	-	9e-10	At4g13360	catalytic	O.I.	H.G.	S.X.	Please select
0.35	49.8	0.97	Ta.25764.1.S1_at	CD373831	-	-	6e+0	At5g67070	RALFL34 (ralf-like 34)	O.I.	H.G.	S.X.	Please select
0.34	48.1	0.97	Ta.12481.1.S1_at	BQ172437	-	-	2e+0	At4g30620	unknown protein	O.I.	H.G.	S.X.	Please select
0.33	46.9	0.96	TaAffx.37134.1.A1_s_at	BG906112	-	-	5e+0	At2g06530	VPS2.1	O.I.	H.G.	S.X.	Please select
0.33	46.9	0.96	Ta.27178.1.S1_s_at	BT009539.1	-	-	1e-2	At4g16845	VRN2 (REDUCED VERNALIZATION RESPONSE 2)	O.I.	H.G.	S.X.	Please select
0.33	46.9	0.97	Ta.8833.1.S1_at	BQ162475	-	-	8e-1	At4g17215	unknown protein	O.I.	H.G.	S.X.	Please select
0.31	42.7	0.97	Ta.12373.1.A1_at	CD864961	-	-	2e-3	At2g03270	DNA-binding protein, putative	O.I.	H.G.	S.X.	Please select
0.30	40.9	0.97	Ta.26919.3.S1_a_at	CA639482	-	-	3e-1	At1g65650	UCH2	O.I.	H.G.	S.X.	Please select
0.30	40.9	0.97	Ta.319.2.A1_a_at	BF483256	-	-	2e+0	At3g62320	nucleic acid binding	O.I.	H.G.	S.X.	Please select
0.29	39.2	0.97	Ta.6441.1.A1_s_at	BJ311396	-	-	2e+0	At2g46580	pyridoxine 5'-phosphate oxidase-related	O.I.	H.G.	S.X.	Please select
0.26	33.6	0.97	Ta.6666.1.S1_x_at	BQ170970	-	-	1e-11	At3g49420	Got1-like family protein	O.I.	H.G.	S.X.	Please select
0.24	30.3	0.97	Ta.12121.1.S1_at	CD887416	-	-	1e-5	At2g40930	UBP5 (UBIQUITIN-SPECIFIC PROTEASE 5)	O.I.	H.G.	S.X.	Please select
0.22	27.1	0.97	Ta.13399.1.S1_at	CK195532	-	-	1e-14	At2g43070	protease-associated (PA) domain-containing protein	O.I.	H.G.	S.X.	Please select
0.22	27.1	0.97	Ta.6850.1.S1_at	BJ311627	-	-	8e-19	At5g52210	ATGB1 (ARABIDOPSIS THALIANA GTP-BINDING PROTEIN 1)	O.I.	H.G.	S.X.	Please select
0.20	24.0	0.97	Ta.4093.1.S1_at	BJ258753	-	-	4e+0	At3g24890	ATVAMP728	O.I.	H.G.	S.X.	Please select
0.20	24.0	0.98	Ta.30680.1.S1_a_at	BQ805327	-	-	3e-23	At5g55310	TOP1BETA (DNA TOPOISOMERASE 1 BETA)	O.I.	H.G.	S.X.	Please select
0.16	18.2	0.97	Ta.3775.2.A1_at	BJ253915	-	-	1e+0	At4g37450	AGP18 (ARABINOGALACTAN PROTEIN 18)	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
8.7	98.9	GSM139928	Anther immature pollen rep1	GSE6027	Microarray expression analysis of meiosis and microsporogenesis in hexaploid bread wheat
8.4	98.9	GSM139926	Anther tetrads rep2	GSE6027	Microarray expression analysis of meiosis and microsporogenesis in hexaploid bread wheat
7.7	98.7	GSM139930	Anther immature pollen rep3	GSE6027	Microarray expression analysis of meiosis and microsporogenesis in hexaploid bread wheat
7.1	98.5	GSM139927	Anther tetrads rep3	GSE6027	Microarray expression analysis of meiosis and microsporogenesis in hexaploid bread wheat
5.8	97.9	GSM139925	Anther tetrads rep1	GSE6027	Microarray expression analysis of meiosis and microsporogenesis in hexaploid bread wheat
5.7	97.9	GSM139914	Anther pre-meiosis rep2	GSE6027	Microarray expression analysis of meiosis and microsporogenesis in hexaploid bread wheat
4.5	96.9	GSM314287	tissue type: 22 DAP endosperm - rep1	GSE12508	Transcription patterns during wheat development
4.4	96.8	GSM314284	tissue type: 22 DAP embryo - rep1	GSE12508	Transcription patterns during wheat development
4.1	96.4	GSM314285	tissue type: 22 DAP embryo - rep2	GSE12508	Transcription patterns during wheat development
4.1	96.4	GSM139922	Anther telophaseI-telophaseII rep1	GSE6027	Microarray expression analysis of meiosis and microsporogenesis in hexaploid bread wheat

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Vitis_vinifera

Zea_mays

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