Co-expression analysis

Gene ID Ta.20568.1.S1_at
Gene name sucrose-phosphate synthase 9
Homology with ArabidopsisSimilar to At4g10120: ATSPS4F (HF=5e-2)
Module size 15 genes
NF 0.38
%ile 61.5

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.8192.40.96Ta.20568.1.S1_atBT009472.1sucrose-phosphate synthase 9-5e-2At4g10120ATSPS4FO.I.H.G.S.X.
0.5273.70.96Ta.1307.2.A1_atBJ285945--4e+0At3g12890ASML2 (ACTIVATOR OF SPOMIN::LUC2)O.I.H.G.S.X.
0.4869.00.97Ta.3070.1.S1_x_atBJ229772mitogen-activated protein kinase 2-7e-27At5g19010MPK16O.I.H.G.S.X.
0.4666.80.96Ta.6953.1.A1_atBJ318751--2e+0At2g06200AtGRF6 (GROWTH-REGULATING FACTOR 6)O.I.H.G.S.X.
0.4464.50.97Ta.991.1.S1_a_atCD908127--6e-42At3g50500SNRK2.2 (SNF1-RELATED PROTEIN KINASE 2.2)O.I.H.G.S.X.
0.4260.90.97Ta.13272.1.A1_atCD885703--6e+0At4g08790nitrilase, putativeO.I.H.G.S.X.
0.3854.70.96Ta.5876.1.S1_atCK196203--2e-16At2g04350long-chain-fatty-acid--CoA ligase family protein / long-chain acyl-CoA synthetase family protein (LACS8)O.I.H.G.S.X.
0.3346.90.97Ta.5016.1.S1_atCK195019--2e+0At1g31720unknown proteinO.I.H.G.S.X.
0.3244.40.97TaAffx.31638.1.S1_atCA611097--8e+0At5g39510SGR4 (SHOOT GRAVITROPSIM 4)O.I.H.G.S.X.
0.3040.90.96Ta.991.1.S1_x_atCD908127--6e-42At3g50500SNRK2.2 (SNF1-RELATED PROTEIN KINASE 2.2)O.I.H.G.S.X.
0.2939.20.97Ta.1640.1.S1_a_atCK193687--3e-101At1g10630ATARFA1F (ARABIDOPSIS THALIANA ADP-RIBOSYLATION FACTOR A1F)O.I.H.G.S.X.
0.2735.60.97Ta.6531.1.S1_a_atBJ214727--5e-1At3g17440NPSN13 (NOVEL PLANT SNARE 13)O.I.H.G.S.X.
0.2633.60.97Ta.3955.1.A1_atBJ255753--1e+0At5g17560BolA-like family proteinO.I.H.G.S.X.
0.2532.10.97Ta.13272.1.A1_s_atCD885703--6e+0At4g08790nitrilase, putativeO.I.H.G.S.X.
0.1922.40.97Ta.7677.1.S1_x_atCK194882--5e-58At2g44100ATGDI1 (ARABIDOPSIS THALIANA GUANOSINE NUCLEOTIDE DIPHOSPHATE DISSOCIATION INHIBITOR 1)O.I.H.G.S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
9.999.1GSM314288tissue type: 22 DAP endosperm - rep2GSE12508Transcription patterns during wheat developmentLink to GEO
9.099.0GSM314289tissue type: 22 DAP endosperm - rep3GSE12508Transcription patterns during wheat developmentLink to GEO
8.098.8GSM314287tissue type: 22 DAP endosperm - rep1GSE12508Transcription patterns during wheat developmentLink to GEO
6.198.1GSM298067Leaf tissue of Paragon at 5 weeks post germination, biological rep 1GSE11774Expression data from cold treated wheat cultivarsLink to GEO
3.695.6GSM298092Crown tissue of Solstice at 3 weeks post germinationGSE11774Expression data from cold treated wheat cultivarsLink to GEO
3.094.3GSM314286tissue type: 22 DAP embryo - rep3GSE12508Transcription patterns during wheat developmentLink to GEO
3.094.3GSM139914Anther pre-meiosis rep2GSE6027Microarray expression analysis of meiosis and microsporogenesis in hexaploid bread wheatLink to GEO
3.094.3GSM298064Crown tissue of Harnesk at 9 weeks post germination, biological rep 2GSE11774Expression data from cold treated wheat cultivarsLink to GEO
3.094.3GSM298094Crown tissue of Solstice at 9 weeks post germinationGSE11774Expression data from cold treated wheat cultivarsLink to GEO
3.094.3GSM139922Anther telophaseI-telophaseII rep1GSE6027Microarray expression analysis of meiosis and microsporogenesis in hexaploid bread wheatLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Vitis_vinifera
Zea_mays



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