Co-expression analysis

Gene ID Ta.20469.1.S1_at
Gene name
Homology with ArabidopsisSimilar to At5g49900: catalytic/ glucosylceramidase (HF=1e-14)
Module size 6 genes
NF 0.69
%ile 92.2

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.6182.00.95Ta.20469.1.S1_atCA642463--1e-14At5g49900catalytic/ glucosylceramidaseO.I.H.G.S.X.
0.8092.20.97Ta.6113.1.S1_atCA668966--3e+0At5g22300NIT4 (NITRILASE 4)O.I.H.G.S.X.
0.6786.30.96Ta.6101.1.S1_atCD937323--2e-10At3g48890ATMP2O.I.H.G.S.X.
0.6182.00.95Ta.6113.2.S1_x_atAJ611253--2e+0At2g46810basic helix-loop-helix (bHLH) family proteinO.I.H.G.S.X.
0.5072.40.97Ta.6101.2.S1_a_atCA697971--3e-16At3g48890ATMP2O.I.H.G.S.X.
0.5072.40.97Ta.6113.1.S1_a_atCA668966--3e+0At5g22300NIT4 (NITRILASE 4)O.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
9.099.0GSM298070Leaf tissue of Paragon at 9 weeks post germination, biological rep 2GSE11774Expression data from cold treated wheat cultivarsLink to GEO
6.298.1GSM298092Crown tissue of Solstice at 3 weeks post germinationGSE11774Expression data from cold treated wheat cultivarsLink to GEO
3.996.1GSM314289tissue type: 22 DAP endosperm - rep3GSE12508Transcription patterns during wheat developmentLink to GEO
3.695.6GSM250900TcLr34_3dpi_inoculated_rep3GSE9915Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheatLink to GEO
3.695.6GSM143517Thatcher_Lr34 (susceptible), rust inoculated basal leaf, replication 3GSE6227Expression data from rust or mock inoculated, fully expanded flag leaf halvesLink to GEO
3.595.4GSM143506Thatcher_Lr34 (resistant), rust inoculated distal leaf, replication 2GSE6227Expression data from rust or mock inoculated, fully expanded flag leaf halvesLink to GEO
3.595.4GSM143502Thatcher_Lr34 (resistant), rust inoculated basal leaf, replication 1GSE6227Expression data from rust or mock inoculated, fully expanded flag leaf halvesLink to GEO
3.495.2GSM314288tissue type: 22 DAP endosperm - rep2GSE12508Transcription patterns during wheat developmentLink to GEO
3.395.0GSM250914Tc_7dpi_inoculated_rep3GSE9915Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheatLink to GEO
3.194.5GSM143515Thatcher_Lr34 (susceptible), rust inoculated basal leaf, replication 1GSE6227Expression data from rust or mock inoculated, fully expanded flag leaf halvesLink to GEO

Inter-species module comparison

A co-expression module including the maize gene, Zm.18304.1.S1_at, orthologous to the query gene, Ta.20469.1.S1_at

VF%ileGene IDRepr. IDGene NameFunc.EvAGI codeArabidopsis gene nameO.I.H.G.S.X.Other DB
0.9199.0Zm.18304.1.S1_atAt5g49900--6e-14At5g49900catalytic/ glucosylceramidaseO.I.H.G.S.X.
0.5571.6Zm.10708.1.A1_atAt5g49900hypothetical protein LOC100272302-3e-24At2g46860AtPPa3 (Arabidopsis thaliana pyrophosphorylase 3)O.I.H.G.S.X.
0.5065.7Zm.19025.1.S1_atAt5g49900hypothetical protein LOC100192597-1e+0At1g48440unknown proteinO.I.H.G.S.X.
0.2928.1Zm.19152.1.A1_atAt5g49900--5e-8At4g09570CPK4O.I.H.G.S.X.
0.2318.6Zm.3505.1.A1_atAt5g49900hypothetical protein LOC100191273-1e-11At2g03290protein transmembrane transporterO.I.H.G.S.X.
0.2216.9Zm.3531.1.A1_atAt5g49900p5cs-5e-12At3g55610P5CS2 (DELTA 1-PYRROLINE-5-CARBOXYLATE SYNTHASE 2)O.I.H.G.S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Vitis_vinifera



Back to the CoP portal site

Back to the KAGIANA project homepage