Co-expression analysis

Gene ID Ta.20469.1.S1_at
Gene name
Homology with ArabidopsisSimilar to At5g49900: catalytic/ glucosylceramidase (HF=1e-14)
Module size 6 genes
NF 0.69
%ile 92.2

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.6182.00.95Ta.20469.1.S1_atCA642463--1e-14At5g49900catalytic/ glucosylceramidaseO.I.H.G.S.X.
0.8092.20.97Ta.6113.1.S1_atCA668966--3e+0At5g22300NIT4 (NITRILASE 4)O.I.H.G.S.X.
0.6786.30.96Ta.6101.1.S1_atCD937323--2e-10At3g48890ATMP2O.I.H.G.S.X.
0.6182.00.95Ta.6113.2.S1_x_atAJ611253--2e+0At2g46810basic helix-loop-helix (bHLH) family proteinO.I.H.G.S.X.
0.5072.40.97Ta.6101.2.S1_a_atCA697971--3e-16At3g48890ATMP2O.I.H.G.S.X.
0.5072.40.97Ta.6113.1.S1_a_atCA668966--3e+0At5g22300NIT4 (NITRILASE 4)O.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
9.099.0GSM298070Leaf tissue of Paragon at 9 weeks post germination, biological rep 2GSE11774Expression data from cold treated wheat cultivarsLink to GEO
6.298.1GSM298092Crown tissue of Solstice at 3 weeks post germinationGSE11774Expression data from cold treated wheat cultivarsLink to GEO
3.996.1GSM314289tissue type: 22 DAP endosperm - rep3GSE12508Transcription patterns during wheat developmentLink to GEO
3.695.6GSM250900TcLr34_3dpi_inoculated_rep3GSE9915Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheatLink to GEO
3.695.6GSM143517Thatcher_Lr34 (susceptible), rust inoculated basal leaf, replication 3GSE6227Expression data from rust or mock inoculated, fully expanded flag leaf halvesLink to GEO
3.595.4GSM143506Thatcher_Lr34 (resistant), rust inoculated distal leaf, replication 2GSE6227Expression data from rust or mock inoculated, fully expanded flag leaf halvesLink to GEO
3.595.4GSM143502Thatcher_Lr34 (resistant), rust inoculated basal leaf, replication 1GSE6227Expression data from rust or mock inoculated, fully expanded flag leaf halvesLink to GEO
3.495.2GSM314288tissue type: 22 DAP endosperm - rep2GSE12508Transcription patterns during wheat developmentLink to GEO
3.395.0GSM250914Tc_7dpi_inoculated_rep3GSE9915Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheatLink to GEO
3.194.5GSM143515Thatcher_Lr34 (susceptible), rust inoculated basal leaf, replication 1GSE6227Expression data from rust or mock inoculated, fully expanded flag leaf halvesLink to GEO

Inter-species module comparison

A co-expression module including the Arabidopsis gene, At5g49900, orthologous to the query gene, Ta.20469.1.S1_at

VF%ileGene IDRepr. IDGene NameFunc.O.I.H.G.S.X.Other DB
1.00100.0At5g49900835053catalytic/ glucosylceramidaseF:catalytic activity, glucosylceramidase activity;P:glucosylceramide catabolic process, sphingolipid metabolic process;C:integral to membrane, membrane;BPMOAO.I.H.G.S.X.
0.9998.1At5g67080836843MAPKKK19member of MEKK subfamilyO.I.H.G.S.X.
0.9897.8At1g64610842769WD-40 repeat family proteinF:signal transducer activity;P:signal transduction;C:heterotrimeric G-protein complex;MFBOPAO.I.H.G.S.X.
0.9897.8At5g58190835931ECT10F:unknown;P:unknown;C:unknown;MPFOO.I.H.G.S.X.
0.9797.6At1g23210838930AtGH9B6 (Arabidopsis thaliana glycosyl hydrolase 9B6)F:hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:carbohydrate metabolic process;C:endomembrane system;PBMOFO.I.H.G.S.X.
0.9797.6At1g77410844078BGAL16 (beta-galactosidase 16)F:cation binding, sugar binding, beta-galactosidase activity, catalytic activity;P:lactose catabolic process, using glucoside 3-dehydrogenase, carbohydrate metabolic process, lactose catabolic process via UDP-galactose, lactose catabolic process;C:endomembrane system, beta-galactosidase complex;MBPFOAO.I.H.G.S.X.
0.9797.6At2g44190819026EDE1 (ENDOSPERM DEFECTIVE 1)Encodes a novel microtubule binding protein that preferentially associates with nuclear microtubules during mitosis and is essential during the mitotic and cytokinetic stages that generate the endosperm and embryo.O.I.H.G.S.X.
0.9697.3At1g77250844061PHD finger family proteinF:protein binding, DNA binding, zinc ion binding;P:regulation of transcription, DNA-dependent;C:unknown;MPFOO.I.H.G.S.X.
0.9697.3At4g08590826420ORTHL (ORTHRUS-LIKE)F:ubiquitin-protein ligase activity, zinc ion binding;P:protein ubiquitination;C:cytoplasm;MPOFBVO.I.H.G.S.X.
0.9697.3At1g08600837382ATRXF:helicase activity, DNA binding, nucleic acid binding, ATP binding;P:unknown;C:unknown;MOBFPVAO.I.H.G.S.X.
0.9697.3At4g20500827798transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.9697.3At5g27610832823DNA binding / transcription factorF:transcription factor activity, DNA binding;P:biological_process unknown;C:cellular_component unknown;MOPFBVO.I.H.G.S.X.
0.9697.3At5g60250836147zinc finger (C3HC4-type RING finger) family proteinF:protein binding, zinc ion binding, nucleic acid binding;P:unknown;C:unknown;MFPOBO.I.H.G.S.X.
0.9597.0At3g01015821318-F:unknown;P:unknown;C:unknown;PMOFO.I.H.G.S.X.
0.9597.0At3g49450824107F-box family proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.H.G.S.X.
0.9597.0At5g09800830840U-box domain-containing proteinF:ubiquitin-protein ligase activity, binding;P:response to chitin;C:ubiquitin ligase complex;POMBFO.I.H.G.S.X.
0.9496.7At4g17483827461palmitoyl protein thioesterase family proteinF:palmitoyl-(protein) hydrolase activity;P:protein modification process;C:endomembrane system;MPFOO.I.H.G.S.X.
0.9496.7At5g10950830962cylicin-relatedF:molecular_function unknown;P:biological_process unknown;C:cytosol;MOFBPVAO.I.H.G.S.X.
0.9496.7At4g35560829708-F:molecular_function unknown;P:unknown;C:CUL4 RING ubiquitin ligase complex;MOFPBO.I.H.G.S.X.
0.9496.7At5g55490835642GEX1 (GAMETE EXPRESSED PROTEIN 1)Encodes a transmembrane domain containing protein that is expressed in pollen germ cells.O.I.H.G.S.X.
0.9396.4At2g06040815159-F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPFOBO.I.H.G.S.X.
0.9396.4At4g30860829210SDG4 (SET DOMAIN GROUP 4)Encodes a member of the trxG protein family. Contains a SET domain which is known to be involved in modification of histone tails by methylation. Interacts physically with AMS, but the implications of this interaction are unknown.Overexpression results in plieotrophic developmental defects.O.I.H.G.S.X.
0.9396.4At3g60760825247unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.H.G.S.X.
0.9396.4At5g42010834206WD-40 repeat family proteinF:signal transducer activity;P:signal transduction, response to salt stress;C:heterotrimeric G-protein complex;MFBOPAO.I.H.G.S.X.
0.9396.4At3g22760821847SOL1CXC domain containing TSO1-like protein 1. The gene is expressed in stamens, pollen mother cells, and immature ovules.O.I.H.G.S.X.
0.9396.4At1g48310841251CHR18F:helicase activity, DNA binding, nucleic acid binding, ATP binding;P:biological_process unknown;C:cellular_component unknown;MOFBPVAO.I.H.G.S.X.
0.9296.0At1g12370837792PHR1 (PHOTOLYASE 1)encodes an amino acid sequence with significant homology to the recently characterized type II photolyases. The uvr2-1 mutant is unable to remove CPDs in vivo, and plant extracts lack detectable photolyase activity , is sensitive to UV-B and is an alleleO.I.H.G.S.X.
0.9296.0At5g16100831467unknown proteinF:unknown;P:unknown;C:cellular_component unknown;PO.I.H.G.S.X.
0.9296.0At5g23480832414DNA bindingF:DNA binding;P:histone modification, transcription initiation;C:nucleus;PO.I.H.G.S.X.
0.9296.0At2g17090816214SSP (SHORT SUSPENSOR)F:protein tyrosine kinase activity, binding, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation, N-terminal protein myristoylation;C:cellular_component unknown;PMOBVFO.I.H.G.S.X.
0.9195.6At2g36660818238PAB7 (POLY(A) BINDING PROTEIN 7)polyadenylate-binding protein, putative / PABP, putative. Member of the class III family of PABP proteins.O.I.H.G.S.X.
0.9195.6At2g22600816791KH domain-containing proteinF:RNA binding, nucleic acid binding;P:biological_process unknown;C:unknown;MPFOO.I.H.G.S.X.
0.9195.6At5g49150834974GEX2 (GAMETE EXPRESSED 2)Encodes a transmembrane domain containing protein expressed in sperm cells.O.I.H.G.S.X.
0.9195.6At1g26840839227ORC6 (ORIGIN RECOGNITION COMPLEX PROTEIN 6)Origin Recognition Complex subunit 6. Involved in the initiation of DNA replication. Regulated transcriptionally during cell cycle, peaking at G1/S-phase. Target of E2F/DF family of transcription factors.O.I.H.G.S.X.
0.9195.6At1g54240841865DNA bindingF:DNA binding;P:nucleosome assembly;C:nucleus, nucleosome;PO.I.H.G.S.X.
0.9095.1At3g50310824193MAPKKK20member of MEKK subfamilyO.I.H.G.S.X.
0.9095.1At5g16630831525RAD4F:damaged DNA binding;P:nucleotide-excision repair;C:nucleus, chloroplast;MFOPO.I.H.G.S.X.
0.9095.1At1g52920841725GPCR (G PROTEIN COUPLED RECEPTOR)Encodes a plasma membrane–localized ABA receptor, which interacts with the Gαβγ complex. It has been postulated that the binding of ABA to GCR2 results in the release of the G protein and dissociation of the heterotrimeric complex into Gα and the Gβγ dimer to activate downstream ABA effectors and to trigger the ABA responses.O.I.H.G.S.X.
0.8994.6At2g25560817094DNAJ heat shock N-terminal domain-containing proteinF:unfolded protein binding, heat shock protein binding;P:protein folding;C:cellular_component unknown;BOMPFAVO.I.H.G.S.X.
0.8994.6At4g39753830132kelch repeat-containing F-box family proteinF:molecular_function unknown;P:biological_process unknown;C:chloroplast;PMBOAVFO.I.H.G.S.X.
0.8994.6At4g00240826673PLDBETA2member of C2-PLD subfamilyO.I.H.G.S.X.
0.8994.6At5g05510830434protein kinase-relatedF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MFPOBO.I.H.G.S.X.
0.8894.0At1g554103767461-F:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.8894.0At4g32500829385AKT5member of Stelar K+ outward rectifying channel (SKOR) familyO.I.H.G.S.X.
0.8894.0At1g75770843910unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.H.G.S.X.
0.8793.5At1g79950844335helicase-relatedF:in 6 functions;P:regulation of transcription, DNA-dependent, nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;C:mitochondrion;MBOFAPVO.I.H.G.S.X.
0.8793.5At1g60240842319apical meristem formation protein-relatedF:transcription factor activity;P:regulation of transcription;C:cellular_component unknown;PO.I.H.G.S.X.
0.8793.5At3g47440823898TIP5Encodes AtTIP5;1, functions as water and urea channels in pollen.O.I.H.G.S.X.
0.8592.4At3g12060820380unknown proteinF:unknown;P:biological_process unknown;C:cellular_component unknown;PBMO.I.H.G.S.X.
0.8491.9At3g16380820885PAB6 (POLY(A) BINDING PROTEIN 6)polyadenylate-binding protein, putative / PABP, putative, similar to polyadenylate-binding protein (poly(A)-binding protein) from {Arabidopsis thaliana} SP:P42731, (Cucumis sativus) GI:7528270, {Homo sapiens} SP:Q13310, {Arabidopsis thaliana} SP:Q05196; contains InterPro entry IPR000504: RNA-binding region RNP-1 (RNA recognition motif) (RRM). Member of the class III family of PABP proteins.O.I.H.G.S.X.
0.8491.9At5g07810830674SNF2 domain-containing protein / helicase domain-containing protein / HNH endonuclease domain-containing proteinF:helicase activity, DNA binding, ATP binding, nucleic acid binding, endonuclease activity;P:unknown;C:unknown;MBOFPVAO.I.H.G.S.X.
0.8491.9At5g52340835310ATEXO70A2 (exocyst subunit EXO70 family protein A2)A member of EXO70 gene family, putative exocyst subunits, conserved in land plants. Arabidopsis thaliana contains 23 putative EXO70 genes, which can be classified into eight clusters on the phylogenetic tree.O.I.H.G.S.X.
0.8491.9At1g508103767429transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.8391.4At5g18620831980CHR17 (CHROMATIN REMODELING FACTOR17)F:in 7 functions;P:ATP-dependent chromatin remodeling, chromatin remodeling;C:nucleus, chromatin remodeling complex;MOFBPVAO.I.H.G.S.X.
0.8391.4At2g30580817608DRIP2 (DREB2A-INTERACTING PROTEIN 2)Encodes a C3HC4 RING-domain-containing ubiquitin E3 ligase capable of interacting with DREB2A. DRIP2 seems to be involved in regulating stress-related transcriptional changes and drought tolerance.O.I.H.G.S.X.
0.8391.4At4g37280829882MRG family proteinF:chromatin binding;P:chromatin assembly or disassembly;C:chromatin, nucleus;MFPOBO.I.H.G.S.X.
0.8290.9At1g68120843140BPC3 (BASIC PENTACYSTEINE 3)F:transcription factor activity, DNA binding;P:regulation of transcription, DNA-dependent;C:nucleus;PO.I.H.G.S.X.
0.8290.9At4g32440829379agenet domain-containing proteinF:RNA binding;P:biological_process unknown;C:unknown;PO.I.H.G.S.X.
0.8290.9At5g28340832919pentatricopeptide (PPR) repeat-containing proteinF:unknown;P:biological_process unknown;C:cellular_component unknown;POFO.I.H.G.S.X.
0.8190.4At2g39420818527esterase/lipase/thioesterase family proteinF:catalytic activity;P:unknown;C:unknown;BOPMFVAO.I.H.G.S.X.
0.7888.6At3g15620820804UVR3 (UV REPAIR DEFECTIVE 3)Required for photorepair of 6-4 photoproducts in Arabidopsis thaliana.O.I.H.G.S.X.
0.7888.6At1g15430838114-F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.H.G.S.X.
0.7788.0At1g70590843396F-box family proteinF:binding;P:biological_process unknown;C:chloroplast;BOFMPVO.I.H.G.S.X.
0.7788.0At4g30560829179ATCNGC9 (CYCLIC NUCLEOTIDE GATED CHANNEL 9)member of Cyclic nucleotide gated channel familyO.I.H.G.S.X.
0.7687.4At3g48440824003zinc finger (CCCH-type) family proteinF:zinc ion binding, nucleic acid binding;P:biological_process unknown;C:cellular_component unknown;PMFOO.I.H.G.S.X.
0.7486.1At5g05130830395SNF2 domain-containing protein / helicase domain-containing protein / RING finger domain-containing proteinF:in 7 functions;P:unknown;C:unknown;MOBFPVAO.I.H.G.S.X.
0.7083.5At5g54280835516ATM2 (ARABIDOPSIS THALIANA MYOSIN 2)Type VII myosin geneO.I.H.G.S.X.
0.6781.6At4g31420829269zinc finger (C2H2 type) family proteinF:transcription factor activity;P:regulation of transcription;C:intracellular;MFOPO.I.H.G.S.X.
0.6579.6At3g07020819887UDP-glucose:sterol glucosyltransferase (UGT80A2)F:transferase activity, transferring glycosyl groups;P:lipid glycosylation, carbohydrate metabolic process, metabolic process;C:plasma membrane, membrane;BMFPOVO.I.H.G.S.X.
0.6075.7At4g02730828189transducin family protein / WD-40 repeat family proteinF:nucleotide binding;P:biological_process unknown;C:CUL4 RING ubiquitin ligase complex, heterotrimeric G-protein complex;MFOPBAVO.I.H.G.S.X.

Select a plant to compare co-expressed genes between species.
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Vitis_vinifera
Zea_mays



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