Co-expression analysis

Gene ID	Ta.1977.2.A1_at
Gene name
Homology with Arabidopsis	Similar to At3g07430: emb1990 (embryo defective 1990) (HF=1e+0)
Module size	6 genes
NF	0.61
%ile	87.2

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	98.2	0.96	Ta.1977.2.A1_at	BE231484	-	-	1e+0	At3g07430	emb1990 (embryo defective 1990)	O.I.	H.G.	S.X.	Please select
0.80	92.2	0.96	TaAffx.39457.1.A1_at	BG904975	-	-	2e+0	Atmg00850	-	O.I.	H.G.	S.X.	Please select
0.67	86.3	0.96	TaAffx.26415.1.S1_at	CA689149	-	-	4e+0	At5g62050	OXA1	O.I.	H.G.	S.X.	Please select
0.67	86.3	0.96	TaAffx.56013.1.S1_at	CA658531	-	-	6e-1	At5g38410	ribulose bisphosphate carboxylase small chain 3B / RuBisCO small subunit 3B (RBCS-3B) (ATS3B)	O.I.	H.G.	S.X.	Please select
0.46	66.8	0.96	TaAffx.26385.1.S1_x_at	CA689363	-	-	4e+0	At5g25090	plastocyanin-like domain-containing protein	O.I.	H.G.	S.X.	Please select
0.34	48.1	0.96	Ta.2825.3.S1_x_at	CA655458	-	-	4e+0	At5g25240	-	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
13.2	99.5	GSM298067	Leaf tissue of Paragon at 5 weeks post germination, biological rep 1	GSE11774	Expression data from cold treated wheat cultivars
10.5	99.2	GSM298070	Leaf tissue of Paragon at 9 weeks post germination, biological rep 2	GSE11774	Expression data from cold treated wheat cultivars
8.8	98.9	GSM298068	Leaf tissue of Paragon at 5 weeks post germination, biological rep 2	GSE11774	Expression data from cold treated wheat cultivars
7.0	98.5	GSM298089	Leaf tissue of Solstice at 3 weeks post germination	GSE11774	Expression data from cold treated wheat cultivars
6.3	98.2	GSM111233	genotype H8 developing seed at 5 days after anthesis, biological rep2	GSE4935	wheat expression level polymorphism study 39 genotypes 2 biological reps
5.8	97.9	GSM298065	Leaf tissue of Paragon at 3 weeks post germination, biological rep 1	GSE11774	Expression data from cold treated wheat cultivars
5.8	97.9	GSM250898	TcLr1_3dpi_inoculated_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
5.4	97.7	GSM250895	Tc_3dpi_mock_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
4.9	97.3	GSM298079	Leaf tissue of Solstice at 5 weeks post germination, biological rep 1	GSE11774	Expression data from cold treated wheat cultivars
4.7	97.1	GSM298056	Leaf tissue of Harnesk at 5 weeks post germination, biological rep 2	GSE11774	Expression data from cold treated wheat cultivars

Inter-species module comparison

A co-expression module including the maize gene, Zm.1814.1.S1_at, orthologous to the query gene, Ta.1977.2.A1_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.98	100.0	Zm.1814.1.S1_at	At3g07430	hypothetical protein LOC100192709	-	9e-15	At2g35530	bZIP transcription factor family protein	O.I.	H.G.	S.X.	Please select
0.44	55.7	Zm.4200.1.A1_at	At3g07430	protein phosphatase 2C	-	1e+1	At5g25280	serine-rich protein-related	O.I.	H.G.	S.X.	Please select
0.44	55.7	Zm.18470.1.A1_at	At3g07430	hypothetical protein LOC100279437	-	7e+0	At5g26848	unknown protein	O.I.	H.G.	S.X.	Please select
0.40	48.5	Zm.11831.1.S1_a_at	At3g07430	glucan endo-1,3-beta-glucosidase 6	-	7e-5	At5g58090	glycosyl hydrolase family 17 protein	O.I.	H.G.	S.X.	Please select
0.37	42.3	Zm.1072.1.S1_at	At3g07430	Glycine cleavage complex P-protein	-	6e-98	At4g33010	AtGLDP1 (Arabidopsis thaliana glycine decarboxylase P-protein 1)	O.I.	H.G.	S.X.	Please select
0.35	38.9	Zm.18280.1.S1_at	At3g07430	hypothetical protein LOC100193238	-	2e+0	At5g42797	LCR28 (Low-molecular-weight cysteine-rich 28)	O.I.	H.G.	S.X.	Please select
0.32	33.4	ZmAffx.977.1.S1_at	At3g07430	-	-	8e-1	At4g04630	unknown protein	O.I.	H.G.	S.X.	Please select
0.29	28.1	Zm.19152.1.A1_at	At3g07430	-	-	5e-8	At4g09570	CPK4	O.I.	H.G.	S.X.	Please select
0.29	28.1	Zm.3874.1.A1_at	At3g07430	hypothetical protein LOC100279001	-	8e-1	At1g68370	ARG1 (ALTERED RESPONSE TO GRAVITY 1)	O.I.	H.G.	S.X.	Please select
0.28	28.1	Zm.6566.1.A1_at	At3g07430	hypothetical protein LOC100191991	-	3e-5	At1g51690	ATB ALPHA	O.I.	H.G.	S.X.	Please select
0.27	24.6	Zm.8723.1.A1_a_at	At3g07430	hypothetical protein LOC100277811	-	3e-1	At3g28321	unknown protein	O.I.	H.G.	S.X.	Please select
0.26	22.7	Zm.7544.1.A1_at	At3g07430	mRNA	-	3e-2	At3g20650	mRNA capping enzyme family protein	O.I.	H.G.	S.X.	Please select
0.24	19.8	Zm.12687.1.S1_at	At3g07430	auxin efflux carrier component 1c	-	2e-7	At5g57090	EIR1 (ETHYLENE INSENSITIVE ROOT 1)	O.I.	H.G.	S.X.	Please select
0.23	18.6	Zm.18335.1.S1_at	At3g07430	hypothetical protein LOC100274359	-	4e-2	At4g35390	AGF1 (AT-hook protein of GA feedback 1)	O.I.	H.G.	S.X.	Please select
0.22	16.9	Zm.14451.1.A1_at	At3g07430	hypothetical LOC542155	-	4e-2	At1g51200	zinc finger (AN1-like) family protein	O.I.	H.G.	S.X.	Please select
0.21	15.5	Zm.5851.15.A1_at	At3g07430	-	-	9e-1	At2g04031	-	O.I.	H.G.	S.X.	Please select
0.20	14.2	Zm.4852.2.A1_at	At3g07430	Hypothetical protein LOC100192969	-	3e+0	At3g16300	integral membrane family protein	O.I.	H.G.	S.X.	Please select
0.20	14.2	Zm.7579.1.A1_at	At3g07430	hypothetical protein LOC100276241	-	3e+0	At4g29020	glycine-rich protein	O.I.	H.G.	S.X.	Please select
0.18	11.6	ZmAffx.1107.1.A1_at	At3g07430	-	-	8e-1	At3g19860	basic helix-loop-helix (bHLH) family protein	O.I.	H.G.	S.X.	Please select
0.18	11.6	Zm.4153.1.A1_at	At3g07430	hydrophobic protein LTI6B	-	7e-2	At3g05890	RCI2B (RARE-COLD-INDUCIBLE 2B)	O.I.	H.G.	S.X.	Please select
0.17	10.6	Zm.5851.13.S1_a_at	At3g07430	hypothetical protein LOC100274074	-	2e-20	At4g37550	formamidase, putative / formamide amidohydrolase, putative	O.I.	H.G.	S.X.	Please select
0.17	10.6	Zm.1512.1.A1_at	At3g07430	CL16923_1 protein	-	2e+0	At4g10340	LHCB5 (LIGHT HARVESTING COMPLEX OF PHOTOSYSTEM II 5)	O.I.	H.G.	S.X.	Please select
0.14	7.7	Zm.19203.1.S1_at	At3g07430	hypothetical protein LOC100193957	-	1e-5	At3g07220	transcriptional activator, putative	O.I.	H.G.	S.X.	Please select
0.13	6.8	Zm.2277.1.S1_at	At3g07430	zinc finger, C3HC4 type family protein	-	6e+0	At5g20650	COPT5	O.I.	H.G.	S.X.	Please select
0.11	5.3	Zm.6099.1.A1_at	At3g07430	hypothetical protein LOC100275231	-	5e+0	At3g03826	unknown protein	O.I.	H.G.	S.X.	Please select
0.10	4.6	Zm.4233.1.A1_at	At3g07430	-	-	1e+0	At3g42725	unknown protein	O.I.	H.G.	S.X.	Please select
0.09	4.0	Zm.3530.2.S1_at	At3g07430	Hypothetical protein LOC100192841	-	4e-50	At1g78870	UBC35 (UBIQUITIN-CONJUGATING ENZYME 35)	O.I.	H.G.	S.X.	Please select
0.09	4.0	Zm.3540.1.A1_at	At3g07430	-	-	1e+1	At5g64250	2-nitropropane dioxygenase family / NPD family	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Vitis_vinifera

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