Co-expression analysis

Gene ID	Ta.1977.2.A1_at
Gene name
Homology with Arabidopsis	Similar to At3g07430: emb1990 (embryo defective 1990) (HF=1e+0)
Module size	6 genes
NF	0.61
%ile	87.2

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	98.2	0.96	Ta.1977.2.A1_at	BE231484	-	-	1e+0	At3g07430	emb1990 (embryo defective 1990)	O.I.	H.G.	S.X.	Please select
0.80	92.2	0.96	TaAffx.39457.1.A1_at	BG904975	-	-	2e+0	Atmg00850	-	O.I.	H.G.	S.X.	Please select
0.67	86.3	0.96	TaAffx.26415.1.S1_at	CA689149	-	-	4e+0	At5g62050	OXA1	O.I.	H.G.	S.X.	Please select
0.67	86.3	0.96	TaAffx.56013.1.S1_at	CA658531	-	-	6e-1	At5g38410	ribulose bisphosphate carboxylase small chain 3B / RuBisCO small subunit 3B (RBCS-3B) (ATS3B)	O.I.	H.G.	S.X.	Please select
0.46	66.8	0.96	TaAffx.26385.1.S1_x_at	CA689363	-	-	4e+0	At5g25090	plastocyanin-like domain-containing protein	O.I.	H.G.	S.X.	Please select
0.34	48.1	0.96	Ta.2825.3.S1_x_at	CA655458	-	-	4e+0	At5g25240	-	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
13.2	99.5	GSM298067	Leaf tissue of Paragon at 5 weeks post germination, biological rep 1	GSE11774	Expression data from cold treated wheat cultivars
10.5	99.2	GSM298070	Leaf tissue of Paragon at 9 weeks post germination, biological rep 2	GSE11774	Expression data from cold treated wheat cultivars
8.8	98.9	GSM298068	Leaf tissue of Paragon at 5 weeks post germination, biological rep 2	GSE11774	Expression data from cold treated wheat cultivars
7.0	98.5	GSM298089	Leaf tissue of Solstice at 3 weeks post germination	GSE11774	Expression data from cold treated wheat cultivars
6.3	98.2	GSM111233	genotype H8 developing seed at 5 days after anthesis, biological rep2	GSE4935	wheat expression level polymorphism study 39 genotypes 2 biological reps
5.8	97.9	GSM298065	Leaf tissue of Paragon at 3 weeks post germination, biological rep 1	GSE11774	Expression data from cold treated wheat cultivars
5.8	97.9	GSM250898	TcLr1_3dpi_inoculated_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
5.4	97.7	GSM250895	Tc_3dpi_mock_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
4.9	97.3	GSM298079	Leaf tissue of Solstice at 5 weeks post germination, biological rep 1	GSE11774	Expression data from cold treated wheat cultivars
4.7	97.1	GSM298056	Leaf tissue of Harnesk at 5 weeks post germination, biological rep 2	GSE11774	Expression data from cold treated wheat cultivars

Inter-species module comparison

A co-expression module including the grape gene, 1611498_at, orthologous to the query gene, Ta.1977.2.A1_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.98	100.0	1611498_at	At3g07430	-	-	4e+0	At3g15670	late embryogenesis abundant protein, putative / LEA protein, putative	O.I.	H.G.	S.X.	Please select
0.69	88.3	1615765_x_at	At3g07430	-	-	7e-4	At1g55680	WD-40 repeat family protein	O.I.	H.G.	S.X.	Please select
0.55	77.3	1607302_at	At3g07430	hypothetical protein LOC100253518	-	6e-3	At2g38450	-	O.I.	H.G.	S.X.	Please select
0.46	66.5	1610167_at	At3g07430	hypothetical protein LOC100254398	-	4e-12	At5g14220	HEMG2	O.I.	H.G.	S.X.	Please select
0.45	64.6	1620612_s_at	At3g07430	similar to ADP-ribosylation factor	-	4e-128	At2g47170	ARF1A1C	O.I.	H.G.	S.X.	Please select
0.45	64.6	1621189_at	At3g07430	-	-	2e-5	At5g07120	SNX2b (SORTING NEXIN 2b)	O.I.	H.G.	S.X.	Please select
0.43	61.5	1607448_a_at	At3g07430	hypothetical protein LOC100249185	-	1e+0	At1g02130	ARA-5 (ARABIDOPSIS RAS 5)	O.I.	H.G.	S.X.	Please select
0.40	57.7	1614850_at	At3g07430	-	-	1e-10	At5g66290	unknown protein	O.I.	H.G.	S.X.	Please select
0.40	57.7	1615020_at	At3g07430	hypothetical protein LOC100255532	-	1e+0	At3g11250	60S acidic ribosomal protein P0 (RPP0C)	O.I.	H.G.	S.X.	Please select
0.40	57.7	1611911_at	At3g07430	hypothetical protein LOC100266461	-	1e-121	At5g08530	CI51 (51 kDa subunit of complex I)	O.I.	H.G.	S.X.	Please select
0.38	53.6	1617631_at	At3g07430	hypothetical protein LOC100264042	-	8e-9	At2g42210	mitochondrial import inner membrane translocase subunit Tim17/Tim22/Tim23 family protein	O.I.	H.G.	S.X.	Please select
0.37	51.7	1615419_s_at	At3g07430	hypothetical protein LOC100244646	-	1e-10	At2g33220	-	O.I.	H.G.	S.X.	Please select
0.36	50.7	1608788_at	At3g07430	hypothetical protein LOC100244969	-	2e-5	At5g65250	unknown protein	O.I.	H.G.	S.X.	Please select
0.35	48.5	1613457_s_at	At3g07430	hypothetical protein LOC100248919	-	6e-21	At3g60620	phosphatidate cytidylyltransferase family protein	O.I.	H.G.	S.X.	Please select
0.33	45.7	1608447_at	At3g07430	hypothetical protein LOC100244219	-	3e-1	At3g44620	protein tyrosine phosphatase	O.I.	H.G.	S.X.	Please select
0.32	43.1	1613104_at	At3g07430	hypothetical protein LOC100257801	-	6e-35	At5g63510	GAMMA CAL1 (GAMMA CARBONIC ANHYDRASE LIKE 1)	O.I.	H.G.	S.X.	Please select
0.32	43.1	1618931_at	At3g07430	hypothetical protein LOC100265402	-	2e-31	At3g09840	CDC48 (CELL DIVISION CYCLE 48)	O.I.	H.G.	S.X.	Please select
0.31	41.3	1621680_x_at	At3g07430	-	-	3e-1	At1g76220	unknown protein	O.I.	H.G.	S.X.	Please select
0.31	41.3	1621212_at	At3g07430	hypothetical protein LOC100260205	-	7e-5	At4g12790	ATP-binding family protein	O.I.	H.G.	S.X.	Please select
0.28	37.7	1615783_s_at	At3g07430	hypothetical protein LOC100248438	-	2e-19	At2g40060	protein binding / structural molecule	O.I.	H.G.	S.X.	Please select
0.27	34.0	1611694_at	At3g07430	hypothetical protein LOC100258865	-	2e-24	At2g21410	VHA-A2 (VACUOLAR PROTON ATPASE A2)	O.I.	H.G.	S.X.	Please select
0.27	34.0	1609620_at	At3g07430	-	-	7e+0	At5g51845	-	O.I.	H.G.	S.X.	Please select
0.26	32.0	1606456_at	At3g07430	hypothetical protein LOC100246144	-	2e-15	At4g26701	DNA binding / DNA topoisomerase type I	O.I.	H.G.	S.X.	Please select
0.25	30.5	1613361_s_at	At3g07430	hypothetical protein LOC100242707	-	4e-2	At5g55750	hydroxyproline-rich glycoprotein family protein	O.I.	H.G.	S.X.	Please select
0.25	30.5	1620395_s_at	At3g07430	hypothetical protein LOC100263635	-	4e-94	At5g03290	isocitrate dehydrogenase, putative / NAD+ isocitrate dehydrogenase, putative	O.I.	H.G.	S.X.	Please select
0.19	20.9	1618016_at	At3g07430	hypothetical protein LOC100247325	-	3e-1	At5g35740	glycosyl hydrolase family protein 17	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Zea_mays

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