Co-expression analysis

Gene ID	Ta.1977.2.A1_at
Gene name
Homology with Arabidopsis	Similar to At3g07430: emb1990 (embryo defective 1990) (HF=1e+0)
Module size	6 genes
NF	0.61
%ile	87.2

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	98.2	0.96	Ta.1977.2.A1_at	BE231484	-	-	1e+0	At3g07430	emb1990 (embryo defective 1990)	O.I.	H.G.	S.X.	Please select
0.80	92.2	0.96	TaAffx.39457.1.A1_at	BG904975	-	-	2e+0	Atmg00850	-	O.I.	H.G.	S.X.	Please select
0.67	86.3	0.96	TaAffx.26415.1.S1_at	CA689149	-	-	4e+0	At5g62050	OXA1	O.I.	H.G.	S.X.	Please select
0.67	86.3	0.96	TaAffx.56013.1.S1_at	CA658531	-	-	6e-1	At5g38410	ribulose bisphosphate carboxylase small chain 3B / RuBisCO small subunit 3B (RBCS-3B) (ATS3B)	O.I.	H.G.	S.X.	Please select
0.46	66.8	0.96	TaAffx.26385.1.S1_x_at	CA689363	-	-	4e+0	At5g25090	plastocyanin-like domain-containing protein	O.I.	H.G.	S.X.	Please select
0.34	48.1	0.96	Ta.2825.3.S1_x_at	CA655458	-	-	4e+0	At5g25240	-	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
13.2	99.5	GSM298067	Leaf tissue of Paragon at 5 weeks post germination, biological rep 1	GSE11774	Expression data from cold treated wheat cultivars
10.5	99.2	GSM298070	Leaf tissue of Paragon at 9 weeks post germination, biological rep 2	GSE11774	Expression data from cold treated wheat cultivars
8.8	98.9	GSM298068	Leaf tissue of Paragon at 5 weeks post germination, biological rep 2	GSE11774	Expression data from cold treated wheat cultivars
7.0	98.5	GSM298089	Leaf tissue of Solstice at 3 weeks post germination	GSE11774	Expression data from cold treated wheat cultivars
6.3	98.2	GSM111233	genotype H8 developing seed at 5 days after anthesis, biological rep2	GSE4935	wheat expression level polymorphism study 39 genotypes 2 biological reps
5.8	97.9	GSM298065	Leaf tissue of Paragon at 3 weeks post germination, biological rep 1	GSE11774	Expression data from cold treated wheat cultivars
5.8	97.9	GSM250898	TcLr1_3dpi_inoculated_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
5.4	97.7	GSM250895	Tc_3dpi_mock_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
4.9	97.3	GSM298079	Leaf tissue of Solstice at 5 weeks post germination, biological rep 1	GSE11774	Expression data from cold treated wheat cultivars
4.7	97.1	GSM298056	Leaf tissue of Harnesk at 5 weeks post germination, biological rep 2	GSE11774	Expression data from cold treated wheat cultivars

Inter-species module comparison

A co-expression module including the barley gene, Contig4437_at, orthologous to the query gene, Ta.1977.2.A1_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.64	80.9	Contig4437_at	At3g07430	-	-	7e+0	At5g67600	unknown protein	O.I.	H.G.	S.X.	Please select
0.70	86.0	Contig12644_at	At3g07430	-	-	1e+0	At4g02430	pre-mRNA splicing factor, putative / SR1 protein, putative	O.I.	H.G.	S.X.	Please select
0.67	84.7	Contig21450_at	At3g07430	-	-	7e+0	At4g01510	ARV2	O.I.	H.G.	S.X.	Please select
0.58	74.9	Contig13809_at	At3g07430	-	-	3e-2	At2g23420	NAPRT2 (NICOTINATE PHOSPHORIBOSYLTRANSFERASE 2)	O.I.	H.G.	S.X.	Please select
0.53	69.7	HS09F12u_s_at	At3g07430	-	-	7e-1	At2g33780	VQ motif-containing protein	O.I.	H.G.	S.X.	Please select
0.47	62.2	Contig8787_s_at	At3g07430	-	-	3e+0	At5g11340	GCN5-related N-acetyltransferase (GNAT) family protein	O.I.	H.G.	S.X.	Please select
0.44	58.9	Contig8788_at	At3g07430	-	-	2e+0	At3g12630	zinc finger (AN1-like) family protein	O.I.	H.G.	S.X.	Please select
0.43	56.4	Contig15716_at	At3g07430	-	-	5e-2	At1g75620	glyoxal oxidase-related	O.I.	H.G.	S.X.	Please select
0.43	56.4	Contig24801_at	At3g07430	-	-	2e+0	At3g50640	unknown protein	O.I.	H.G.	S.X.	Please select
0.36	47.1	Contig16174_at	At3g07430	-	-	5e+0	At3g56490	zinc-binding protein, putative / protein kinase C inhibitor, putative	O.I.	H.G.	S.X.	Please select
0.32	40.3	Contig9449_at	At3g07430	-	-	3e-18	At2g27350	OTU-like cysteine protease family protein	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Populus_trichocarpa

Vitis_vinifera

Zea_mays

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