Co-expression analysis

Gene ID Ta.19640.1.S1_at
Gene name
Homology with ArabidopsisSimilar to At2g20130: LCV1 (LIKE COV 1) (HF=3e+0)
Module size 9 genes
NF 0.17
%ile 31.0

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.9498.90.95Ta.19640.1.S1_atCA654797--3e+0At2g20130LCV1 (LIKE COV 1)O.I.H.G.S.X.
0.2735.60.98Ta.9383.1.S1_a_atBQ483833--6e-4At2g37160transducin family protein / WD-40 repeat family proteinO.I.H.G.S.X.
0.2329.00.97TaAffx.28721.1.A1_x_atBJ311371--1e+0At3g57810OTU-like cysteine protease family proteinO.I.H.G.S.X.
0.1922.40.97Ta.11781.1.A1_atBQ170788--7e+0At4g29170ATMND1O.I.H.G.S.X.
0.1922.40.97Ta.523.1.S1_atBE604675--2e-5At2g30880pleckstrin homology (PH) domain-containing proteinO.I.H.G.S.X.
0.1821.00.97Ta.4881.2.A1_a_atBJ215436--1e+0At5g06450nucleic acid bindingO.I.H.G.S.X.
0.1213.30.97TaAffx.48523.2.S1_atBJ319054--4e+0At4g09320NDPK1O.I.H.G.S.X.
0.1112.40.98Ta.6588.1.A1_atCK161154--1e-24At5g06140SNX1 (SORTING NEXIN 1)O.I.H.G.S.X.
0.078.60.96Ta.991.1.S1_a_atCD908127--6e-42At3g50500SNRK2.2 (SNF1-RELATED PROTEIN KINASE 2.2)O.I.H.G.S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
6.698.3GSM343682Wheat var. Kennedy_control_rep2GSE13660Gene expression analysis of the wheat response to infection by Fusarium pseudograminearumLink to GEO
6.598.3GSM343688Wheat var. Kennedy_Fp inoculated_rep3GSE13660Gene expression analysis of the wheat response to infection by Fusarium pseudograminearumLink to GEO
6.098.0GSM343685Wheat var. Kennedy_control_rep3GSE13660Gene expression analysis of the wheat response to infection by Fusarium pseudograminearumLink to GEO
5.497.7GSM343678Wheat var. Kennedy_control_rep1GSE13660Gene expression analysis of the wheat response to infection by Fusarium pseudograminearumLink to GEO
4.997.3GSM343687Wheat var. Kennedy_Fp inoculated_rep2GSE13660Gene expression analysis of the wheat response to infection by Fusarium pseudograminearumLink to GEO
4.196.4GSM343686Wheat var. Kennedy_Fp inoculated_rep1GSE13660Gene expression analysis of the wheat response to infection by Fusarium pseudograminearumLink to GEO
3.094.3GSM314261tissue type: seedling, root - rep2GSE12508Transcription patterns during wheat developmentLink to GEO
2.893.6GSM139928Anther immature pollen rep1GSE6027Microarray expression analysis of meiosis and microsporogenesis in hexaploid bread wheatLink to GEO
2.692.9GSM314262tissue type: seedling, root - rep3GSE12508Transcription patterns during wheat developmentLink to GEO
2.592.5GSM298092Crown tissue of Solstice at 3 weeks post germinationGSE11774Expression data from cold treated wheat cultivarsLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Vitis_vinifera
Zea_mays



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