Co-expression analysis

Gene ID	Ta.1964.3.S1_x_at
Gene name
Homology with Arabidopsis	Similar to At3g13500: unknown protein (HF=2e+0)
Module size	6 genes
NF	0.70
%ile	92.9

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.59	79.8	0.96	Ta.1964.3.S1_x_at	CK213330	-	-	2e+0	At3g13500	unknown protein	O.I.	H.G.	S.X.	Please select
0.91	98.2	0.97	Ta.7261.2.A1_at	BJ309551	-	-	3e-1	At1g28960	ATNUDX15 (ARABIDOPSIS THALIANA NUDIX HYDROLASE HOMOLOG 15)	O.I.	H.G.	S.X.	Please select
0.80	92.2	0.97	Ta.7261.2.A1_a_at	BJ309551	-	-	3e-1	At1g28960	ATNUDX15 (ARABIDOPSIS THALIANA NUDIX HYDROLASE HOMOLOG 15)	O.I.	H.G.	S.X.	Please select
0.73	89.1	0.97	Ta.1964.1.S1_x_at	CD890475	-	-	2e+0	At3g13500	unknown protein	O.I.	H.G.	S.X.	Please select
0.57	79.2	0.97	Ta.7649.2.S1_x_at	BJ321934	-	-	8e-5	At1g12410	CLP2 (CLP PROTEASE PROTEOLYTIC SUBUNIT 2)	O.I.	H.G.	S.X.	Please select
0.47	67.9	0.97	Ta.13250.2.S1_x_at	CK158867	-	-	7e-4	At5g20720	CPN20 (CHAPERONIN 20)	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
8.8	98.9	GSM343682	Wheat var. Kennedy_control_rep2	GSE13660	Gene expression analysis of the wheat response to infection by Fusarium pseudograminearum
8.7	98.9	GSM343688	Wheat var. Kennedy_Fp inoculated_rep3	GSE13660	Gene expression analysis of the wheat response to infection by Fusarium pseudograminearum
8.5	98.9	GSM343678	Wheat var. Kennedy_control_rep1	GSE13660	Gene expression analysis of the wheat response to infection by Fusarium pseudograminearum
8.3	98.8	GSM343687	Wheat var. Kennedy_Fp inoculated_rep2	GSE13660	Gene expression analysis of the wheat response to infection by Fusarium pseudograminearum
7.7	98.7	GSM343685	Wheat var. Kennedy_control_rep3	GSE13660	Gene expression analysis of the wheat response to infection by Fusarium pseudograminearum
6.1	98.1	GSM343686	Wheat var. Kennedy_Fp inoculated_rep1	GSE13660	Gene expression analysis of the wheat response to infection by Fusarium pseudograminearum
3.9	96.1	GSM111233	genotype H8 developing seed at 5 days after anthesis, biological rep2	GSE4935	wheat expression level polymorphism study 39 genotypes 2 biological reps
3.7	95.8	GSM250899	TcLr34_3dpi_mock_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
3.2	94.8	GSM250895	Tc_3dpi_mock_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
3.0	94.3	GSM250897	TcLr1_3dpi_mock_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat

Inter-species module comparison

A co-expression module including the maize gene, Zm.9060.1.A1_at, orthologous to the query gene, Ta.1964.3.S1_x_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.72	88.6	Zm.9060.1.A1_at	At3g13500	hypothetical protein LOC100274301	-	1e+0	At5g57370	unknown protein	O.I.	H.G.	S.X.	Please select
0.58	75.1	Zm.8600.1.S1_at	At3g13500	-	-	6e-2	At5g52200	unknown protein	O.I.	H.G.	S.X.	Please select
0.51	66.4	Zm.4774.1.A1_at	At3g13500	hypothetical protein LOC100191958	-	1e+0	At3g26360	unknown protein	O.I.	H.G.	S.X.	Please select
0.49	61.9	Zm.5115.1.A1_at	At3g13500	hypothetical protein LOC100272658	-	2e-46	At3g20290	ATEHD1 (EPS15 HOMOLOGY DOMAIN 1)	O.I.	H.G.	S.X.	Please select
0.47	59.9	Zm.17656.1.S1_at	At3g13500	-	-	5e+0	At4g08151	unknown protein	O.I.	H.G.	S.X.	Please select
0.47	59.9	Zm.5230.1.A1_at	At3g13500	acyl-desaturase	-	2e-17	At2g43710	SSI2	O.I.	H.G.	S.X.	Please select
0.44	55.7	Zm.8612.1.A1_at	At3g13500	hypothetical protein LOC100278970	-	6e+0	At3g27380	SDH2-1	O.I.	H.G.	S.X.	Please select
0.44	55.7	Zm.1134.1.A1_at	At3g13500	hypothetical protein LOC100193278	-	3e+0	At2g26940	zinc finger (C2H2 type) family protein	O.I.	H.G.	S.X.	Please select
0.44	55.7	Zm.8846.1.A1_at	At3g13500	-	-	4e+0	At3g29250	copper ion binding / oxidoreductase	O.I.	H.G.	S.X.	Please select
0.42	51.3	Zm.11338.1.A1_at	At3g13500	hypothetical protein LOC100274516	-	3e-6	At2g40190	glycosyl transferase family 1 protein	O.I.	H.G.	S.X.	Please select
0.40	48.5	Zm.2012.1.S1_at	At3g13500	-	-	8e+0	At5g23220	NIC3 (NICOTINAMIDASE 3)	O.I.	H.G.	S.X.	Please select
0.39	45.6	Zm.9213.1.A1_at	At3g13500	hypothetical protein LOC100278667	-	5e+0	At5g45590	unknown protein	O.I.	H.G.	S.X.	Please select
0.35	38.9	Zm.8639.1.A1_at	At3g13500	-	-	2e+1	At5g58600	PMR5 (POWDERY MILDEW RESISTANT 5)	O.I.	H.G.	S.X.	Please select
0.34	37.2	Zm.18038.1.S1_at	At3g13500	-	-	2e+1	At5g66700	HB53	O.I.	H.G.	S.X.	Please select
0.32	33.4	Zm.5070.1.A1_at	At3g13500	hypothetical protein LOC100193023	-	2e-16	At1g22950	iron ion binding / oxidoreductase/ oxidoreductase, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors	O.I.	H.G.	S.X.	Please select
0.29	28.1	Zm.583.1.S1_at	At3g13500	tangled1	-	3e-1	At1g21350	antioxidant/ oxidoreductase	O.I.	H.G.	S.X.	Please select
0.26	22.7	Zm.13196.1.S1_at	At3g13500	t-snare	-	6e-2	At5g59210	myosin heavy chain-related	O.I.	H.G.	S.X.	Please select
0.22	16.9	Zm.7309.1.S1_at	At3g13500	nucleosome/chromatin assembly factor A	-	2e-3	At1g18800	NRP2 (NAP1-RELATED PROTEIN 2)	O.I.	H.G.	S.X.	Please select
0.21	15.5	Zm.3783.1.S1_at	At3g13500	Betaine aldehyde dehydrogenase	-	6e-4	At3g48170	ALDH10A9	O.I.	H.G.	S.X.	Please select
0.21	15.5	ZmAffx.1134.1.S1_at	At3g13500	-	-	8e-1	At4g10270	wound-responsive family protein	O.I.	H.G.	S.X.	Please select
0.20	14.2	Zm.6411.1.A1_at	At3g13500	Hypothetical protein LOC100193027	-	7e-3	At1g23900	GAMMA-ADAPTIN 1 (GAMMA-ADAPTIN 1)	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Vitis_vinifera

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