Co-expression analysis

Gene ID Ta.1964.3.S1_x_at
Gene name
Homology with ArabidopsisSimilar to At3g13500: unknown protein (HF=2e+0)
Module size 6 genes
NF 0.70
%ile 92.9

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.5979.80.96Ta.1964.3.S1_x_atCK213330--2e+0At3g13500unknown proteinO.I.H.G.S.X.
0.9198.20.97Ta.7261.2.A1_atBJ309551--3e-1At1g28960ATNUDX15 (ARABIDOPSIS THALIANA NUDIX HYDROLASE HOMOLOG 15)O.I.H.G.S.X.
0.8092.20.97Ta.7261.2.A1_a_atBJ309551--3e-1At1g28960ATNUDX15 (ARABIDOPSIS THALIANA NUDIX HYDROLASE HOMOLOG 15)O.I.H.G.S.X.
0.7389.10.97Ta.1964.1.S1_x_atCD890475--2e+0At3g13500unknown proteinO.I.H.G.S.X.
0.5779.20.97Ta.7649.2.S1_x_atBJ321934--8e-5At1g12410CLP2 (CLP PROTEASE PROTEOLYTIC SUBUNIT 2)O.I.H.G.S.X.
0.4767.90.97Ta.13250.2.S1_x_atCK158867--7e-4At5g20720CPN20 (CHAPERONIN 20)O.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
8.898.9GSM343682Wheat var. Kennedy_control_rep2GSE13660Gene expression analysis of the wheat response to infection by Fusarium pseudograminearumLink to GEO
8.798.9GSM343688Wheat var. Kennedy_Fp inoculated_rep3GSE13660Gene expression analysis of the wheat response to infection by Fusarium pseudograminearumLink to GEO
8.598.9GSM343678Wheat var. Kennedy_control_rep1GSE13660Gene expression analysis of the wheat response to infection by Fusarium pseudograminearumLink to GEO
8.398.8GSM343687Wheat var. Kennedy_Fp inoculated_rep2GSE13660Gene expression analysis of the wheat response to infection by Fusarium pseudograminearumLink to GEO
7.798.7GSM343685Wheat var. Kennedy_control_rep3GSE13660Gene expression analysis of the wheat response to infection by Fusarium pseudograminearumLink to GEO
6.198.1GSM343686Wheat var. Kennedy_Fp inoculated_rep1GSE13660Gene expression analysis of the wheat response to infection by Fusarium pseudograminearumLink to GEO
3.996.1GSM111233genotype H8 developing seed at 5 days after anthesis, biological rep2GSE4935wheat expression level polymorphism study 39 genotypes 2 biological repsLink to GEO
3.795.8GSM250899TcLr34_3dpi_mock_rep3GSE9915Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheatLink to GEO
3.294.8GSM250895Tc_3dpi_mock_rep3GSE9915Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheatLink to GEO
3.094.3GSM250897TcLr1_3dpi_mock_rep3GSE9915Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheatLink to GEO

Inter-species module comparison

A co-expression module including the rice gene, Os10g0566700, orthologous to the query gene, Ta.1964.3.S1_x_at

VF%ileGene IDRepr. IDGene NameFunc.EvAGI codeArabidopsis gene nameO.I.H.G.S.X.Other DB
0.8395.8Os10g0566700At3g13500-Chaperonin Cpn10 family protein1e+0At3g60210chloroplast chaperonin 10, putativeO.I.H.G.S.X.
0.8395.8Os06g0114000At3g13500-RuBisCO subunit binding-protein beta subunit (60kDa chaperonin beta subunit) (CPN-60 beta) (Fragment)6e-70At3g13470chaperonin, putativeO.I.H.G.S.X.
0.7391.1Os08g0254900At3g13500-Hypothetical protein3e+0At5g03610GDSL-motif lipase/hydrolase family proteinO.I.H.G.S.X.
0.6787.2Os06g0196900At3g13500-20 kDa chaperonin, chloroplast precursor (ProteinCpn21) (Chloroplast protein Cpn10) (Chloroplastchaperonin 10) (Ch-CPN10) (Chaperonin 20)2e-3At5g20720CPN20 (CHAPERONIN 20)O.I.H.G.S.X.
0.5777.0Os02g0168800At3g13500-Porphobilinogen deaminase (Fragment)5e-8At5g08280HEMC (HYDROXYMETHYLBILANE SYNTHASE)O.I.H.G.S.X.
0.2931.1Os05g0103200At3g13500-Peptidyl-prolyl cis-trans isomerase TLP20,chloroplast precursor (EC 5.2.1.8) (PPIase) (Rotamase)(Thylakoid lumen PPIase of 20 kDa)2e-28At5g13120peptidyl-prolyl cis-trans isomerase cyclophilin-type family proteinO.I.H.G.S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Vitis_vinifera
Zea_mays



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