CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Ta.1964.3.S1_x_at

Gene name
Homology with Arabidopsis Similar to At3g13500: unknown protein (HF=2e+0)

Module size 6 genes

NF 0.70

%ile 92.9

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.59 79.8 0.96 Ta.1964.3.S1_x_at CK213330 - - 2e+0 At3g13500 unknown protein O.I. H.G. S.X.
0.91 98.2 0.97 Ta.7261.2.A1_at BJ309551 - - 3e-1 At1g28960 ATNUDX15 (ARABIDOPSIS THALIANA NUDIX HYDROLASE HOMOLOG 15) O.I. H.G. S.X.
0.80 92.2 0.97 Ta.7261.2.A1_a_at BJ309551 - - 3e-1 At1g28960 ATNUDX15 (ARABIDOPSIS THALIANA NUDIX HYDROLASE HOMOLOG 15) O.I. H.G. S.X.
0.73 89.1 0.97 Ta.1964.1.S1_x_at CD890475 - - 2e+0 At3g13500 unknown protein O.I. H.G. S.X.
0.57 79.2 0.97 Ta.7649.2.S1_x_at BJ321934 - - 8e-5 At1g12410 CLP2 (CLP PROTEASE PROTEOLYTIC SUBUNIT 2) O.I. H.G. S.X.
0.47 67.9 0.97 Ta.13250.2.S1_x_at CK158867 - - 7e-4 At5g20720 CPN20 (CHAPERONIN 20) O.I. H.G. S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
8.8 98.9 GSM343682 Wheat var. Kennedy_control_rep2 GSE13660 Gene expression analysis of the wheat response to infection by Fusarium pseudograminearum
8.7 98.9 GSM343688 Wheat var. Kennedy_Fp inoculated_rep3 GSE13660 Gene expression analysis of the wheat response to infection by Fusarium pseudograminearum
8.5 98.9 GSM343678 Wheat var. Kennedy_control_rep1 GSE13660 Gene expression analysis of the wheat response to infection by Fusarium pseudograminearum
8.3 98.8 GSM343687 Wheat var. Kennedy_Fp inoculated_rep2 GSE13660 Gene expression analysis of the wheat response to infection by Fusarium pseudograminearum
7.7 98.7 GSM343685 Wheat var. Kennedy_control_rep3 GSE13660 Gene expression analysis of the wheat response to infection by Fusarium pseudograminearum
6.1 98.1 GSM343686 Wheat var. Kennedy_Fp inoculated_rep1 GSE13660 Gene expression analysis of the wheat response to infection by Fusarium pseudograminearum
3.9 96.1 GSM111233 genotype H8 developing seed at 5 days after anthesis, biological rep2 GSE4935 wheat expression level polymorphism study 39 genotypes 2 biological reps
3.7 95.8 GSM250899 TcLr34_3dpi_mock_rep3 GSE9915 Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
3.2 94.8 GSM250895 Tc_3dpi_mock_rep3 GSE9915 Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
3.0 94.3 GSM250897 TcLr1_3dpi_mock_rep3 GSE9915 Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat

Inter-species module comparison

A co-expression module including the barley gene, HVSMEa0004A18r2_at, orthologous to the query gene, Ta.1964.3.S1_x_at

VF %ile Gene ID Repr. ID Gene Name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.64 80.9 HVSMEa0004A18r2_at At3g13500 - - 3e+0 At1g61160 - O.I. H.G. S.X.
0.71 87.1 Contig7388_at At3g13500 - - 6e-5 At3g47960 proton-dependent oligopeptide transport (POT) family protein O.I. H.G. S.X.
0.57 74.9 basd0c03_s_at At3g13500 - - 3e+0 At3g16770 ATEBP (ETHYLENE-RESPONSIVE ELEMENT BINDING PROTEIN) O.I. H.G. S.X.
0.53 69.7 Contig14243_at At3g13500 - - 4e+0 At1g19115 unknown protein O.I. H.G. S.X.
0.44 58.9 Contig13179_at At3g13500 - - 8e-6 At1g03750 SWI2 (SWITCH 2) O.I. H.G. S.X.
0.44 58.9 Contig11039_at At3g13500 multiple inositol polyphosphate phosphatase PhyIIa2 - 4e-3 At1g09870 histidine acid phosphatase family protein O.I. H.G. S.X.
0.31 38.6 EBma03_SQ003_L08_at At3g13500 - - 4e-1 At3g57590 - O.I. H.G. S.X.
0.26 30.4 Contig9479_s_at At3g13500 - - 2e+0 At5g58470 TAF15b (TBP-ASSOCIATED FACTOR 15b) O.I. H.G. S.X.
0.19 19.6 Contig7283_at At3g13500 - - 5e-8 At2g26760 CYCB1 O.I. H.G. S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Oryza_sativa
Populus_trichocarpa
Vitis_vinifera
Zea_mays

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