Co-expression analysis

Gene ID Ta.1964.3.S1_x_at
Gene name
Homology with ArabidopsisSimilar to At3g13500: unknown protein (HF=2e+0)
Module size 6 genes
NF 0.70
%ile 92.9

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.5979.80.96Ta.1964.3.S1_x_atCK213330--2e+0At3g13500unknown proteinO.I.H.G.S.X.
0.9198.20.97Ta.7261.2.A1_atBJ309551--3e-1At1g28960ATNUDX15 (ARABIDOPSIS THALIANA NUDIX HYDROLASE HOMOLOG 15)O.I.H.G.S.X.
0.8092.20.97Ta.7261.2.A1_a_atBJ309551--3e-1At1g28960ATNUDX15 (ARABIDOPSIS THALIANA NUDIX HYDROLASE HOMOLOG 15)O.I.H.G.S.X.
0.7389.10.97Ta.1964.1.S1_x_atCD890475--2e+0At3g13500unknown proteinO.I.H.G.S.X.
0.5779.20.97Ta.7649.2.S1_x_atBJ321934--8e-5At1g12410CLP2 (CLP PROTEASE PROTEOLYTIC SUBUNIT 2)O.I.H.G.S.X.
0.4767.90.97Ta.13250.2.S1_x_atCK158867--7e-4At5g20720CPN20 (CHAPERONIN 20)O.I.H.G.S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
8.898.9GSM343682Wheat var. Kennedy_control_rep2GSE13660Gene expression analysis of the wheat response to infection by Fusarium pseudograminearumLink to GEO
8.798.9GSM343688Wheat var. Kennedy_Fp inoculated_rep3GSE13660Gene expression analysis of the wheat response to infection by Fusarium pseudograminearumLink to GEO
8.598.9GSM343678Wheat var. Kennedy_control_rep1GSE13660Gene expression analysis of the wheat response to infection by Fusarium pseudograminearumLink to GEO
8.398.8GSM343687Wheat var. Kennedy_Fp inoculated_rep2GSE13660Gene expression analysis of the wheat response to infection by Fusarium pseudograminearumLink to GEO
7.798.7GSM343685Wheat var. Kennedy_control_rep3GSE13660Gene expression analysis of the wheat response to infection by Fusarium pseudograminearumLink to GEO
6.198.1GSM343686Wheat var. Kennedy_Fp inoculated_rep1GSE13660Gene expression analysis of the wheat response to infection by Fusarium pseudograminearumLink to GEO
3.996.1GSM111233genotype H8 developing seed at 5 days after anthesis, biological rep2GSE4935wheat expression level polymorphism study 39 genotypes 2 biological repsLink to GEO
3.795.8GSM250899TcLr34_3dpi_mock_rep3GSE9915Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheatLink to GEO
3.294.8GSM250895Tc_3dpi_mock_rep3GSE9915Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheatLink to GEO
3.094.3GSM250897TcLr1_3dpi_mock_rep3GSE9915Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheatLink to GEO

Inter-species module comparison

A co-expression module including the soybean gene, GmaAffx.47834.1.A1_at, orthologous to the query gene, Ta.1964.3.S1_x_at

VF%ileGene IDRepr. IDGene NameFunc.EvAGI codeArabidopsis gene nameO.I.H.G.S.X.Other DB
0.5678.2GmaAffx.47834.1.A1_atAt3g13500--3e-1At4g16330oxidoreductase/ oxidoreductase, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donorsO.I.H.G.S.X.
0.8091.5GmaAffx.14602.1.S1_atAt3g13500--2e-1At3g45851unknown proteinO.I.H.G.S.X.
0.7790.3PsAffx.psHB004xH08f_atAt3g13500--5e+0At3g61840unknown proteinO.I.H.G.S.X.
0.6786.1GmaAffx.14280.1.S1_atAt3g13500--1e-8At1g22710SUC2 (SUCROSE-PROTON SYMPORTER 2)O.I.H.G.S.X.
0.5071.7HgAffx.19033.4.A1_x_atAt3g13500--6e-2At1g54410dehydrin family proteinO.I.H.G.S.X.
0.5071.7HgAffx.19033.4.A1_atAt3g13500--6e-2At1g54410dehydrin family proteinO.I.H.G.S.X.
0.4360.6HgAffx.17965.1.S1_atAt3g13500--2e+0At2g23340AP2 domain-containing transcription factor, putativeO.I.H.G.S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Vitis_vinifera
Zea_mays



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