Co-expression analysis

Gene ID	Ta.19604.1.S1_at
Gene name
Homology with Arabidopsis	Similar to At5g46795: MSP2 (microspore-specific promoter 2) (HF=8e+0)
Module size	23 genes
NF	0.27
%ile	44.0

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.92	98.5	0.93	Ta.19604.1.S1_at	CA653992	-	-	8e+0	At5g46795	MSP2 (microspore-specific promoter 2)	O.I.	H.G.	S.X.	Please select
0.38	54.7	0.94	Ta.11338.3.S1_x_at	CA647367	-	-	4e+0	At3g47200	unknown protein	O.I.	H.G.	S.X.	Please select
0.34	48.1	0.94	Ta.13695.3.S1_x_at	CA699811	-	-	4e+0	At3g56130	biotin/lipoyl attachment domain-containing protein	O.I.	H.G.	S.X.	Please select
0.33	46.9	0.95	Ta.28719.1.A1_at	CA722261	-	-	1e+0	At5g61890	AP2 domain-containing transcription factor family protein	O.I.	H.G.	S.X.	Please select
0.32	44.4	0.96	Ta.1862.2.S1_x_at	CA690286	-	-	1e-12	At1g53400	unknown protein	O.I.	H.G.	S.X.	Please select
0.32	44.4	0.93	Ta.5027.1.S1_at	CD927425	-	-	3e-1	At4g18720	transcription elongation factor-related	O.I.	H.G.	S.X.	Please select
0.32	44.4	0.94	TaAffx.110345.1.S1_at	CA660143	-	-	4e+0	At5g24270	SOS3 (SALT OVERLY SENSITIVE 3)	O.I.	H.G.	S.X.	Please select
0.27	35.6	0.94	Ta.622.3.S1_at	CA692932	AML15	-	7e-1	At4g18120	AML3 (ARABIDOPSIS MEI2-LIKE 3)	O.I.	H.G.	S.X.	Please select
0.26	33.6	0.95	Ta.983.1.S1_at	BT009628.1	-	-	4e-4	At4g04800	methionine sulfoxide reductase domain-containing protein / SeIR domain-containing protein	O.I.	H.G.	S.X.	Please select
0.24	30.3	0.96	Ta.3335.1.S1_at	CD890295	-	-	2e+0	At3g53520	UXS1 (UDP-GLUCURONIC ACID DECARBOXYLASE 1)	O.I.	H.G.	S.X.	Please select
0.23	29.0	0.94	TaAffx.64572.1.S1_s_at	CK207549	-	-	4e-2	At2g19740	60S ribosomal protein L31 (RPL31A)	O.I.	H.G.	S.X.	Please select
0.23	29.0	0.97	Ta.6082.1.S1_at	BQ752961	-	-	5e-1	At3g07590	small nuclear ribonucleoprotein D1, putative / snRNP core protein D1, putative / Sm protein D1, putative	O.I.	H.G.	S.X.	Please select
0.23	29.0	0.96	Ta.7147.3.S1_a_at	BJ315882	-	-	5e-3	At3g54300	ATVAMP727 (VESICLE-ASSOCIATED MEMBRANE PROTEIN 727)	O.I.	H.G.	S.X.	Please select
0.22	27.1	0.95	Ta.3463.3.S1_a_at	CA681836	-	-	2e-5	At4g36410	UBC17 (UBIQUITIN-CONJUGATING ENZYME 17)	O.I.	H.G.	S.X.	Please select
0.22	27.1	0.96	Ta.1862.1.S1_at	CK211902	-	-	1e-13	At1g53400	unknown protein	O.I.	H.G.	S.X.	Please select
0.22	27.1	0.98	Ta.6082.1.S1_x_at	BQ752961	-	-	5e-1	At3g07590	small nuclear ribonucleoprotein D1, putative / snRNP core protein D1, putative / Sm protein D1, putative	O.I.	H.G.	S.X.	Please select
0.21	25.5	0.95	Ta.6673.1.A1_a_at	BJ319533	-	-	2e-9	At5g55530	C2 domain-containing protein	O.I.	H.G.	S.X.	Please select
0.21	25.5	0.95	Ta.8309.3.S1_at	CA605094	-	-	4e+0	At2g22121	LCR35 (Low-molecular-weight cysteine-rich 35)	O.I.	H.G.	S.X.	Please select
0.21	25.5	0.95	TaAffx.54536.1.S1_x_at	CA680299	-	-	2e-1	At2g38340	AP2 domain-containing transcription factor, putative (DRE2B)	O.I.	H.G.	S.X.	Please select
0.16	18.2	0.96	Ta.8023.1.S1_at	CA640979	-	-	4e-3	At4g30360	ATCNGC17	O.I.	H.G.	S.X.	Please select
0.16	18.2	0.95	Ta.3001.1.S1_at	CK211723	-	-	4e-21	At5g56140	KH domain-containing protein	O.I.	H.G.	S.X.	Please select
0.13	14.6	0.94	TaAffx.16699.2.S1_x_at	CA682179	-	-	4e+0	At5g36130	cytochrome P450 family	O.I.	H.G.	S.X.	Please select
0.11	12.4	0.96	TaAffx.105929.1.S1_at	BJ226774	-	-	4e+0	At5g19875	unknown protein	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
4.5	96.9	GSM314275	tissue type: pistil, before anthesis - rep1	GSE12508	Transcription patterns during wheat development
4.2	96.6	GSM314277	tissue type: pistil, before anthesis - rep3	GSE12508	Transcription patterns during wheat development
4.2	96.6	GSM298091	Leaf tissue of Solstice at 9 weeks post germination	GSE11774	Expression data from cold treated wheat cultivars
4.1	96.4	GSM298071	Crown tissue of Paragon at 3 weeks post germination, biological rep 1	GSE11774	Expression data from cold treated wheat cultivars
4.0	96.3	GSM298072	Crown tissue of Paragon at 3 weeks post germination, biological rep 2	GSE11774	Expression data from cold treated wheat cultivars
4.0	96.3	GSM298076	Crown tissue of Paragon at 9 weeks post germination, biological rep 2	GSE11774	Expression data from cold treated wheat cultivars
3.7	95.8	GSM314276	tissue type: pistil, before anthesis - rep2	GSE12508	Transcription patterns during wheat development
3.6	95.6	GSM298079	Leaf tissue of Solstice at 5 weeks post germination, biological rep 1	GSE11774	Expression data from cold treated wheat cultivars
3.5	95.4	GSM314284	tissue type: 22 DAP embryo - rep1	GSE12508	Transcription patterns during wheat development
3.1	94.5	GSM324492	Si+ B- rep3	GSE12936	Transcriptomic analysis of the effect of silicon on wheat plants infected or uninfected with powdery mildew

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Vitis_vinifera

Zea_mays

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