Co-expression analysis

Gene ID	Ta.1953.3.S1_a_at
Gene name
Homology with Arabidopsis	Similar to At5g07030: aspartic-type endopeptidase (HF=3e-4)
Module size	12 genes
NF	0.34
%ile	54.5

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.76	90.1	0.91	Ta.1953.3.S1_a_at	CK211170	-	-	3e-4	At5g07030	aspartic-type endopeptidase	O.I.	H.G.	S.X.	Please select
0.73	89.1	0.95	Ta.18223.1.S1_at	BJ236082	-	-	8e+0	At5g62360	invertase/pectin methylesterase inhibitor family protein	O.I.	H.G.	S.X.	Please select
0.58	79.2	0.95	Ta.18223.1.S1_a_at	BJ236082	-	-	8e+0	At5g62360	invertase/pectin methylesterase inhibitor family protein	O.I.	H.G.	S.X.	Please select
0.56	78.6	0.96	Ta.18223.3.S1_x_at	CA705899	-	-	1e+1	At5g50460	protein transport protein SEC61 gamma subunit, putative	O.I.	H.G.	S.X.	Please select
0.50	72.4	0.96	Ta.18223.2.S1_at	CA676155	-	-	8e-1	At5g18430	GDSL-motif lipase/hydrolase family protein	O.I.	H.G.	S.X.	Please select
0.48	69.0	0.95	AFFX-Tae-r2-Bs-dap-5_at	AFFX-Tae-r2-Bs-dap-5	-	-			-	O.I.	H.G.	S.X.	Please select
0.34	48.1	0.95	Ta.254.1.S1_s_at	AF123609.1	-	-	2e-2	At1g01600	CYP86A4	O.I.	H.G.	S.X.	Please select
0.26	33.6	0.94	Ta.5204.1.S1_at	BQ166567	-	-	7e-1	At3g08680	leucine-rich repeat transmembrane protein kinase, putative	O.I.	H.G.	S.X.	Please select
0.26	33.6	0.95	Ta.10042.2.S1_at	CA711010	-	-	2e-2	At4g28780	GDSL-motif lipase/hydrolase family protein	O.I.	H.G.	S.X.	Please select
0.24	30.3	0.94	Ta.9983.2.S1_at	AY555573.1	Dihydroflavonol 4-reductase	-	5e-5	At5g42800	DFR (DIHYDROFLAVONOL 4-REDUCTASE)	O.I.	H.G.	S.X.	Please select
0.17	19.8	0.94	Ta.28494.2.S1_x_at	CD454848	-	-	9e-2	At3g23830	GRP4 (GLYCINE-RICH RNA-BINDING PROTEIN 4)	O.I.	H.G.	S.X.	Please select
0.16	18.2	0.94	Ta.1953.3.S1_at	CK211170	-	-	3e-4	At5g07030	aspartic-type endopeptidase	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
4.8	97.2	GSM111236	genotype F38b developing seed at 5 days after anthesis, biological rep1	GSE4935	wheat expression level polymorphism study 39 genotypes 2 biological reps
4.1	96.4	GSM111185	genotype C22 developing seed at 5 days after anthesis, biological rep2	GSE4935	wheat expression level polymorphism study 39 genotypes 2 biological reps
3.8	96.0	GSM111178	genotype DH95 developing seed at 5 days after anthesis, biological rep1	GSE4935	wheat expression level polymorphism study 39 genotypes 2 biological reps
3.8	96.0	GSM111177	genotype E5 developing seed at 5 days after anthesis, biological rep2	GSE4935	wheat expression level polymorphism study 39 genotypes 2 biological reps
3.6	95.6	GSM111216	genotype D15 developing seed at 5 days after anthesis, biological rep1	GSE4935	wheat expression level polymorphism study 39 genotypes 2 biological reps
3.5	95.4	GSM138198	genotype C22 developing seed at 5 days after anthesis, biological rep1	GSE5939	Wheat expression level polymorphism study 36 genotypes 2 biological reps from SB location
3.4	95.2	GSM111200	genotype D39 developing seed at 5 days after anthesis, biological rep1	GSE4935	wheat expression level polymorphism study 39 genotypes 2 biological reps
3.4	95.2	GSM111192	genotype F38a developing seed at 5 days after anthesis, biological rep1	GSE4935	wheat expression level polymorphism study 39 genotypes 2 biological reps
3.4	95.2	GSM111204	genotype B10 developing seed at 5 days after anthesis, biological rep1	GSE4935	wheat expression level polymorphism study 39 genotypes 2 biological reps
3.3	95.0	GSM111214	genotype C58 developing seed at 5 days after anthesis, biological rep1	GSE4935	wheat expression level polymorphism study 39 genotypes 2 biological reps

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Vitis_vinifera

Zea_mays

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