Co-expression analysis

Gene ID	Ta.19456.1.A1_s_at
Gene name
Homology with Arabidopsis	Similar to At2g20875: EPF1 (EPIDERMAL PATTERNING FACTOR 1) (HF=3e-1)
Module size	6 genes
NF	0.60
%ile	86.2

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.71	88.0	0.91	Ta.19456.1.A1_s_at	CD865926	-	-	3e-1	At2g20875	EPF1 (EPIDERMAL PATTERNING FACTOR 1)	O.I.	H.G.	S.X.	Please select
0.60	81.0	0.94	Ta.28185.2.S1_x_at	CD869435	-	-	6e-1	At3g46900	COPT2	O.I.	H.G.	S.X.	Please select
0.50	72.4	0.92	TaAffx.47673.2.S1_s_at	CA661229	-	-	4e-3	At5g35460	unknown protein	O.I.	H.G.	S.X.	Please select
0.50	72.4	0.97	TaAffx.47673.1.S1_at	BQ806349	-	-	3e-9	At5g35460	unknown protein	O.I.	H.G.	S.X.	Please select
0.44	64.5	0.94	TaAffx.20065.1.S1_at	CK207580	-	-	2e-1	At3g45970	ATEXLA1 (ARABIDOPSIS THALIANA EXPANSIN-LIKE A1)	O.I.	H.G.	S.X.	Please select
0.40	58.4	0.94	Ta.28185.1.S1_at	AL820475	-	-	2e-4	At3g46900	COPT2	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
10.4	99.2	GSM298062	Crown tissue of Harnesk at 5 weeks post germination, biological rep 2	GSE11774	Expression data from cold treated wheat cultivars
6.0	98.0	GSM314261	tissue type: seedling, root - rep2	GSE12508	Transcription patterns during wheat development
6.0	98.0	GSM298061	Crown tissue of Harnesk at 5 weeks post germination, biological rep 1	GSE11774	Expression data from cold treated wheat cultivars
5.4	97.7	GSM298063	Crown tissue of Harnesk at 9 weeks post germination, biological rep 1	GSE11774	Expression data from cold treated wheat cultivars
5.2	97.5	GSM298094	Crown tissue of Solstice at 9 weeks post germination	GSE11774	Expression data from cold treated wheat cultivars
5.1	97.5	GSM314284	tissue type: 22 DAP embryo - rep1	GSE12508	Transcription patterns during wheat development
4.8	97.2	GSM138157	genotype DH91 developing seed at 5 days after anthesis, biological rep3	GSE5939	Wheat expression level polymorphism study 36 genotypes 2 biological reps from SB location
4.4	96.8	GSM250899	TcLr34_3dpi_mock_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
4.0	96.3	GSM314277	tissue type: pistil, before anthesis - rep3	GSE12508	Transcription patterns during wheat development
3.9	96.1	GSM298060	Crown tissue of Harnesk at 3 weeks post germination, biological rep 2	GSE11774	Expression data from cold treated wheat cultivars

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Vitis_vinifera

Zea_mays

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