Co-expression analysis

Gene ID Ta.19453.1.S1_x_at
Gene name
Homology with ArabidopsisSimilar to At3g23610: dual specificity protein phosphatase (DsPTP1) (HF=8e-2)
Module size 33 genes
NF 0.50
%ile 76.7

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.8493.60.95Ta.19453.1.S1_x_atCA652007--8e-2At3g23610dual specificity protein phosphatase (DsPTP1)O.I.H.G.S.X.
0.8092.20.97Ta.26276.1.A1_atCD921355--2e-6At4g04940transducin family protein / WD-40 repeat family proteinO.I.H.G.S.X.
0.6986.90.97Ta.7689.1.A1_atCD910439--5e-1At5g18140DNAJ heat shock N-terminal domain-containing proteinO.I.H.G.S.X.
0.6886.50.97TaAffx.128564.1.S1_atCA657655--7e-1At1g10490unknown proteinO.I.H.G.S.X.
0.6886.50.97Ta.6315.1.S1_a_atCK200373--3e-1At5g57120-O.I.H.G.S.X.
0.6383.10.95Ta.29909.1.A1_atCA600741--1e+0At1g61780postsynaptic protein-relatedO.I.H.G.S.X.
0.6282.30.96Ta.10177.1.A1_atBJ311805--5e+0Atcg00130-O.I.H.G.S.X.
0.6081.00.97Ta.8969.2.S1_atBQ162705--3e+0At1g43667protease inhibitor/seed storage/lipid transfer protein (LTP) family proteinO.I.H.G.S.X.
0.5979.80.96Ta.7563.1.A1_atBJ230359--5e+0At2g18390TTN5 (TITAN 5)O.I.H.G.S.X.
0.5979.80.96Ta.16984.1.A1_atCD452579--1e-1At2g18120SRS4 (SHI-RELATED SEQUENCE 4)O.I.H.G.S.X.
0.5879.20.96TaAffx.4395.2.A1_atBJ307011--2e+1At5g25102unknown proteinO.I.H.G.S.X.
0.5879.20.96Ta.9201.1.S1_x_atCK197564--4e-28At3g12860nucleolar protein Nop56, putativeO.I.H.G.S.X.
0.5779.20.96TaAffx.65940.1.A1_atBJ215869--2e+0At4g31060AP2 domain-containing transcription factor, putativeO.I.H.G.S.X.
0.5678.60.97Ta.9201.3.S1_x_atCA603340--1e-4At1g56110NOP56 (Arabidopsis homolog of nucleolar protein Nop56)O.I.H.G.S.X.
0.5475.50.96Ta.11479.1.S1_atBQ170182--4e-1At4g34910DEAD/DEAH box helicase, putative (RH16)O.I.H.G.S.X.
0.5475.50.96TaAffx.37007.1.S1_atBJ311550--2e+0At5g64160unknown proteinO.I.H.G.S.X.
0.5374.90.96Ta.9201.3.S1_atCA603340--1e-4At1g56110NOP56 (Arabidopsis homolog of nucleolar protein Nop56)O.I.H.G.S.X.
0.5273.70.96Ta.1736.1.S1_a_atCK159221--5e-17At1g63780IMP4O.I.H.G.S.X.
0.5173.00.97Ta.7464.1.S1_atBJ319947--6e-1At3g15080exonuclease family proteinO.I.H.G.S.X.
0.4969.70.97Ta.9095.1.A1_x_atCD454280--2e+0At4g09620-O.I.H.G.S.X.
0.4464.50.97Ta.7097.1.S1_x_atCK154419--8e-1At3g23620brix domain-containing proteinO.I.H.G.S.X.
0.4159.60.97Ta.7224.1.A1_atBQ801327--1e+0At2g24140unknown proteinO.I.H.G.S.X.
0.4159.60.97TaAffx.19366.1.A1_atCD897280--3e-1At3g61200thioesterase family proteinO.I.H.G.S.X.
0.3956.10.97Ta.16166.1.S1_atCA601819--6e-1At5g20120unknown proteinO.I.H.G.S.X.
0.3956.10.97TaAffx.4182.1.S1_atBJ230530--4e+0At5g59990-O.I.H.G.S.X.
0.3651.90.97Ta.8969.1.S1_a_atBJ294160--1e-2At5g41190-O.I.H.G.S.X.
0.3651.90.97Ta.24666.1.A1_atBQ161217--5e+0At5g11900eukaryotic translation initiation factor SUI1 family proteinO.I.H.G.S.X.
0.3549.80.97Ta.9276.1.S1_atBQ162540--3e-9At5g37530thiF family proteinO.I.H.G.S.X.
0.3448.10.96Ta.21558.1.S1_atCD871560--1e-1At4g25760AtGDU2 (Arabidopsis thaliana GLUTAMINE DUMPER 2)O.I.H.G.S.X.
0.3346.90.96Ta.10904.1.A1_atCK196169--2e-4At2g18900transducin family protein / WD-40 repeat family proteinO.I.H.G.S.X.
0.3346.90.96Ta.25280.1.S1_atCK208963--1e-2At2g19385zinc ion bindingO.I.H.G.S.X.
0.3040.90.96Ta.11184.2.A1_a_atCK207612--1e+0At3g26855-O.I.H.G.S.X.
0.2430.30.97Ta.6498.1.A1_s_atBJ228594--1e+0At3g45285-O.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
6.298.1GSM314261tissue type: seedling, root - rep2GSE12508Transcription patterns during wheat developmentLink to GEO
6.198.1GSM314256tissue type: germinating seed, root - rep3GSE12508Transcription patterns during wheat developmentLink to GEO
5.197.5GSM298092Crown tissue of Solstice at 3 weeks post germinationGSE11774Expression data from cold treated wheat cultivarsLink to GEO
4.096.3GSM314262tissue type: seedling, root - rep3GSE12508Transcription patterns during wheat developmentLink to GEO
3.896.0GSM314254tissue type: germinating seed, root - rep1GSE12508Transcription patterns during wheat developmentLink to GEO
3.595.4GSM314260tissue type: seedling, root - rep1GSE12508Transcription patterns during wheat developmentLink to GEO
3.294.8GSM139914Anther pre-meiosis rep2GSE6027Microarray expression analysis of meiosis and microsporogenesis in hexaploid bread wheatLink to GEO
2.793.3GSM298081Leaf tissue of Solstice at 9 weeks post germination, biological rep 1GSE11774Expression data from cold treated wheat cultivarsLink to GEO
2.592.5GSM298072Crown tissue of Paragon at 3 weeks post germination, biological rep 2GSE11774Expression data from cold treated wheat cultivarsLink to GEO
2.592.5GSM298062Crown tissue of Harnesk at 5 weeks post germination, biological rep 2GSE11774Expression data from cold treated wheat cultivarsLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Vitis_vinifera
Zea_mays



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