Co-expression analysis

Gene ID Ta.19423.1.S1_a_at
Gene name
Homology with ArabidopsisSimilar to At5g54960: PDC2 (pyruvate decarboxylase-2) (HF=2e-36)
Module size 6 genes
NF 0.13
%ile 25.7

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.6786.30.96Ta.19423.1.S1_a_atCD934753--2e-36At5g54960PDC2 (pyruvate decarboxylase-2)O.I.H.G.S.X.
0.3040.90.97Ta.10284.1.S1_a_atBU672165--9e-19At2g20840secretory carrier membrane protein (SCAMP) family proteinO.I.H.G.S.X.
0.2024.00.96TaAffx.130819.1.A1_atBG607589--4e-9At3g02290zinc finger (C3HC4-type RING finger) family proteinO.I.H.G.S.X.
0.1719.80.97Ta.5993.1.S1_atCK192868--6e-1At2g42750DNAJ heat shock N-terminal domain-containing proteinO.I.H.G.S.X.
0.067.60.97Ta.3003.1.S1_s_atBE398996--3e-44At5g26751ATSK11O.I.H.G.S.X.
0.056.70.97Ta.3207.1.S1_a_atBJ230159--8e-12At5g08080SYP132 (SYNTAXIN OF PLANTS 132)O.I.H.G.S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
13.399.5GSM343685Wheat var. Kennedy_control_rep3GSE13660Gene expression analysis of the wheat response to infection by Fusarium pseudograminearumLink to GEO
13.399.5GSM343682Wheat var. Kennedy_control_rep2GSE13660Gene expression analysis of the wheat response to infection by Fusarium pseudograminearumLink to GEO
12.399.4GSM343688Wheat var. Kennedy_Fp inoculated_rep3GSE13660Gene expression analysis of the wheat response to infection by Fusarium pseudograminearumLink to GEO
10.099.1GSM343687Wheat var. Kennedy_Fp inoculated_rep2GSE13660Gene expression analysis of the wheat response to infection by Fusarium pseudograminearumLink to GEO
8.698.9GSM343678Wheat var. Kennedy_control_rep1GSE13660Gene expression analysis of the wheat response to infection by Fusarium pseudograminearumLink to GEO
7.298.5GSM343686Wheat var. Kennedy_Fp inoculated_rep1GSE13660Gene expression analysis of the wheat response to infection by Fusarium pseudograminearumLink to GEO
6.998.4GSM314260tissue type: seedling, root - rep1GSE12508Transcription patterns during wheat developmentLink to GEO
4.697.0GSM298067Leaf tissue of Paragon at 5 weeks post germination, biological rep 1GSE11774Expression data from cold treated wheat cultivarsLink to GEO
4.697.0GSM111211genotype B11 developing seed at 5 days after anthesis, biological rep2GSE4935wheat expression level polymorphism study 39 genotypes 2 biological repsLink to GEO
3.996.1GSM138137Genotype Domain developing seed at 5 days after anthesis, biological rep3 location SBGSE5937Wheat expression level polymorphism study parental genotypes 2 biological reps from SB locationLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Vitis_vinifera
Zea_mays



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