Co-expression analysis

Gene ID	Ta.19423.1.S1_a_at
Gene name
Homology with Arabidopsis	Similar to At5g54960: PDC2 (pyruvate decarboxylase-2) (HF=2e-36)
Module size	6 genes
NF	0.13
%ile	25.7

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.67	86.3	0.96	Ta.19423.1.S1_a_at	CD934753	-	-	2e-36	At5g54960	PDC2 (pyruvate decarboxylase-2)	O.I.	H.G.	S.X.	Please select
0.30	40.9	0.97	Ta.10284.1.S1_a_at	BU672165	-	-	9e-19	At2g20840	secretory carrier membrane protein (SCAMP) family protein	O.I.	H.G.	S.X.	Please select
0.20	24.0	0.96	TaAffx.130819.1.A1_at	BG607589	-	-	4e-9	At3g02290	zinc finger (C3HC4-type RING finger) family protein	O.I.	H.G.	S.X.	Please select
0.17	19.8	0.97	Ta.5993.1.S1_at	CK192868	-	-	6e-1	At2g42750	DNAJ heat shock N-terminal domain-containing protein	O.I.	H.G.	S.X.	Please select
0.06	7.6	0.97	Ta.3003.1.S1_s_at	BE398996	-	-	3e-44	At5g26751	ATSK11	O.I.	H.G.	S.X.	Please select
0.05	6.7	0.97	Ta.3207.1.S1_a_at	BJ230159	-	-	8e-12	At5g08080	SYP132 (SYNTAXIN OF PLANTS 132)	O.I.	H.G.	S.X.	Please select

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Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
13.3	99.5	GSM343685	Wheat var. Kennedy_control_rep3	GSE13660	Gene expression analysis of the wheat response to infection by Fusarium pseudograminearum
13.3	99.5	GSM343682	Wheat var. Kennedy_control_rep2	GSE13660	Gene expression analysis of the wheat response to infection by Fusarium pseudograminearum
12.3	99.4	GSM343688	Wheat var. Kennedy_Fp inoculated_rep3	GSE13660	Gene expression analysis of the wheat response to infection by Fusarium pseudograminearum
10.0	99.1	GSM343687	Wheat var. Kennedy_Fp inoculated_rep2	GSE13660	Gene expression analysis of the wheat response to infection by Fusarium pseudograminearum
8.6	98.9	GSM343678	Wheat var. Kennedy_control_rep1	GSE13660	Gene expression analysis of the wheat response to infection by Fusarium pseudograminearum
7.2	98.5	GSM343686	Wheat var. Kennedy_Fp inoculated_rep1	GSE13660	Gene expression analysis of the wheat response to infection by Fusarium pseudograminearum
6.9	98.4	GSM314260	tissue type: seedling, root - rep1	GSE12508	Transcription patterns during wheat development
4.6	97.0	GSM298067	Leaf tissue of Paragon at 5 weeks post germination, biological rep 1	GSE11774	Expression data from cold treated wheat cultivars
4.6	97.0	GSM111211	genotype B11 developing seed at 5 days after anthesis, biological rep2	GSE4935	wheat expression level polymorphism study 39 genotypes 2 biological reps
3.9	96.1	GSM138137	Genotype Domain developing seed at 5 days after anthesis, biological rep3 location SB	GSE5937	Wheat expression level polymorphism study parental genotypes 2 biological reps from SB location

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Vitis_vinifera

Zea_mays

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