Co-expression analysis

Gene ID Ta.19390.1.S1_at
Gene name
Homology with ArabidopsisSimilar to At4g36925: unknown protein (HF=2e+0)
Module size 6 genes
NF 0.04
%ile 11.4

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.9198.20.91Ta.19390.1.S1_atCA651142--2e+0At4g36925unknown proteinO.I.H.G.S.X.
0.2735.60.97Ta.10003.1.S1_atBJ236495--2e-30At5g58030transport protein particle (TRAPP) component Bet3 family proteinO.I.H.G.S.X.
0.2227.10.95Ta.9182.1.S1_atCA600332--7e+0At5g35670iqd33 (IQ-domain 33)O.I.H.G.S.X.
0.089.40.97Ta.10003.1.S1_x_atBJ236495--2e-30At5g58030transport protein particle (TRAPP) component Bet3 family proteinO.I.H.G.S.X.
0.012.40.96Ta.10847.1.S1_atCK205774--4e+0At1g13450DNA binding protein GT-1O.I.H.G.S.X.
0.012.40.97Ta.25019.1.S1_atBT009274.1--9e-5At2g23350PAB4 (POLY(A) BINDING PROTEIN 4)O.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
7.798.7GSM298067Leaf tissue of Paragon at 5 weeks post germination, biological rep 1GSE11774Expression data from cold treated wheat cultivarsLink to GEO
5.998.0GSM250900TcLr34_3dpi_inoculated_rep3GSE9915Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheatLink to GEO
5.797.9GSM250899TcLr34_3dpi_mock_rep3GSE9915Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheatLink to GEO
4.396.7GSM298070Leaf tissue of Paragon at 9 weeks post germination, biological rep 2GSE11774Expression data from cold treated wheat cultivarsLink to GEO
4.196.4GSM250897TcLr1_3dpi_mock_rep3GSE9915Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheatLink to GEO
3.896.0GSM250895Tc_3dpi_mock_rep3GSE9915Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheatLink to GEO
3.595.4GSM298092Crown tissue of Solstice at 3 weeks post germinationGSE11774Expression data from cold treated wheat cultivarsLink to GEO
3.595.4GSM250898TcLr1_3dpi_inoculated_rep3GSE9915Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheatLink to GEO
3.194.5GSM111233genotype H8 developing seed at 5 days after anthesis, biological rep2GSE4935wheat expression level polymorphism study 39 genotypes 2 biological repsLink to GEO
3.194.5GSM298064Crown tissue of Harnesk at 9 weeks post germination, biological rep 2GSE11774Expression data from cold treated wheat cultivarsLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Vitis_vinifera
Zea_mays



Back to the CoP portal site

Back to the KAGIANA project homepage