Co-expression analysis

Gene ID	Ta.1909.1.A1_at
Gene name
Homology with Arabidopsis	Similar to At3g55390: integral membrane family protein (HF=5e-2)
Module size	6 genes
NF	0.03
%ile	10.4

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.80	92.2	0.89	Ta.1909.1.A1_at	BE446796	-	-	5e-2	At3g55390	integral membrane family protein	O.I.	H.G.	S.X.	Please select
0.73	89.1	0.89	Ta.10408.1.S1_at	CN009026	-	-	2e-10	At1g10470	ARR4 (RESPONSE REGULATOR 4)	O.I.	H.G.	S.X.	Please select
0.67	86.3	0.91	Ta.11777.1.S1_x_at	BQ620561	-	-	5e-1	At3g49430	SRp34a (Ser/Arg-rich protein 34a)	O.I.	H.G.	S.X.	Please select
0.55	76.8	0.89	TaAffx.119928.1.A1_s_at	BJ251441	-	-	4e-2	At1g14900	HMGA (HIGH MOBILITY GROUP A)	O.I.	H.G.	S.X.	Please select
0.04	5.8	0.89	Ta.1617.1.S1_at	BE443129	-	-	3e+0	At1g60080	3' exoribonuclease family domain 1-containing protein	O.I.	H.G.	S.X.	Please select
0.01	2.4	0.88	Ta.20430.2.A1_at	BJ287096	-	-	4e+0	At5g27495	ion channel inhibitor	O.I.	H.G.	S.X.	Please select

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Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
16.0	99.6	GSM298067	Leaf tissue of Paragon at 5 weeks post germination, biological rep 1	GSE11774	Expression data from cold treated wheat cultivars
6.7	98.4	GSM298070	Leaf tissue of Paragon at 9 weeks post germination, biological rep 2	GSE11774	Expression data from cold treated wheat cultivars
6.6	98.3	GSM298092	Crown tissue of Solstice at 3 weeks post germination	GSE11774	Expression data from cold treated wheat cultivars
5.6	97.8	GSM246397	SB57_Stem_ rep2_at anthesis	GSE9767	Genotypic differences in water soluble carbohydrate metabolism in stem
4.0	96.3	GSM250898	TcLr1_3dpi_inoculated_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
3.9	96.1	GSM298081	Leaf tissue of Solstice at 9 weeks post germination, biological rep 1	GSE11774	Expression data from cold treated wheat cultivars
3.7	95.8	GSM250896	Tc_3dpi_inoculated_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
3.7	95.8	GSM250900	TcLr34_3dpi_inoculated_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
3.6	95.6	GSM111208	genotype F36 developing seed at 5 days after anthesis, biological rep1	GSE4935	wheat expression level polymorphism study 39 genotypes 2 biological reps
3.4	95.2	GSM250895	Tc_3dpi_mock_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Vitis_vinifera

Zea_mays

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