Co-expression analysis

Gene ID	Ta.19063.1.S1_at
Gene name
Homology with Arabidopsis	Similar to At5g23290: PDF5 (PREFOLDIN 5) (HF=4e+0)
Module size	6 genes
NF	0.10
%ile	22.0

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.63	83.1	0.93	Ta.19063.1.S1_at	CA646746	-	-	4e+0	At5g23290	PDF5 (PREFOLDIN 5)	O.I.	H.G.	S.X.	Please select
0.40	58.4	0.94	TaAffx.59306.1.S1_at	CA603735	-	-	1e+0	At4g22570	APT3 (ADENINE PHOSPHORIBOSYL TRANSFERASE 3)	O.I.	H.G.	S.X.	Please select
0.19	22.4	0.94	TaAffx.112465.1.S1_s_at	CA623726	-	-	3e-13	At4g00360	CYP86A2 (CYTOCHROME P450 86 A2)	O.I.	H.G.	S.X.	Please select
0.14	15.8	0.94	TaAffx.64591.1.S1_at	BJ288225	-	-	1e+0	At1g19010	unknown protein	O.I.	H.G.	S.X.	Please select
0.05	6.7	0.93	TaAffx.50210.1.S1_at	CA744417	-	-	7e-2	At1g60880	AGL56	O.I.	H.G.	S.X.	Please select
0.04	5.8	0.93	TaAffx.31313.1.S1_at	CA617546	-	-	1e+1	At3g52561	unknown protein	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
17.1	99.6	GSM250900	TcLr34_3dpi_inoculated_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
9.7	99.1	GSM250899	TcLr34_3dpi_mock_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
8.7	98.9	GSM250895	Tc_3dpi_mock_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
5.8	97.9	GSM250896	Tc_3dpi_inoculated_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
5.3	97.6	GSM250898	TcLr1_3dpi_inoculated_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
4.8	97.2	GSM250897	TcLr1_3dpi_mock_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
4.0	96.3	GSM298092	Crown tissue of Solstice at 3 weeks post germination	GSE11774	Expression data from cold treated wheat cultivars
3.5	95.4	GSM250908	Tc_7dpi_inoculated_rep2	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
3.3	95.0	GSM298070	Leaf tissue of Paragon at 9 weeks post germination, biological rep 2	GSE11774	Expression data from cold treated wheat cultivars
3.0	94.3	GSM314269	tissue type: immature inflorescence - rep1	GSE12508	Transcription patterns during wheat development

Inter-species module comparison

A co-expression module including the grape gene, 1619878_at, orthologous to the query gene, Ta.19063.1.S1_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	98.8	1619878_at	At5g23290	-	-	1e+0	At1g09935	phosphoglycerate/bisphosphoglycerate mutase family protein	O.I.	H.G.	S.X.	Please select
0.23	27.5	1620754_at	At5g23290	hypothetical protein LOC100247307	-	7e-8	At5g61510	NADP-dependent oxidoreductase, putative	O.I.	H.G.	S.X.	Please select
0.20	22.4	1614481_at	At5g23290	hypothetical protein LOC100253167	-	4e-4	At1g55680	WD-40 repeat family protein	O.I.	H.G.	S.X.	Please select
0.11	11.3	1619575_at	At5g23290	-	-	1e-3	At1g48160	signal recognition particle 19 kDa protein, putative / SRP19, putative	O.I.	H.G.	S.X.	Please select
0.05	6.0	1621858_at	At5g23290	hypothetical protein LOC100266437	-	2e-5	At1g17720	ATB BETA	O.I.	H.G.	S.X.	Please select
0.03	4.2	1609758_at	At5g23290	hypothetical protein LOC100249051	-	7e-6	At2g01680	ankyrin repeat family protein	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Zea_mays

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