CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Ta.19063.1.S1_at

Gene name
Homology with Arabidopsis Similar to At5g23290: PDF5 (PREFOLDIN 5) (HF=4e+0)

Module size 6 genes

NF 0.10

%ile 22.0

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.63 83.1 0.93 Ta.19063.1.S1_at CA646746 - - 4e+0 At5g23290 PDF5 (PREFOLDIN 5) O.I. H.G. S.X.
0.40 58.4 0.94 TaAffx.59306.1.S1_at CA603735 - - 1e+0 At4g22570 APT3 (ADENINE PHOSPHORIBOSYL TRANSFERASE 3) O.I. H.G. S.X.
0.19 22.4 0.94 TaAffx.112465.1.S1_s_at CA623726 - - 3e-13 At4g00360 CYP86A2 (CYTOCHROME P450 86 A2) O.I. H.G. S.X.
0.14 15.8 0.94 TaAffx.64591.1.S1_at BJ288225 - - 1e+0 At1g19010 unknown protein O.I. H.G. S.X.
0.05 6.7 0.93 TaAffx.50210.1.S1_at CA744417 - - 7e-2 At1g60880 AGL56 O.I. H.G. S.X.
0.04 5.8 0.93 TaAffx.31313.1.S1_at CA617546 - - 1e+1 At3g52561 unknown protein O.I. H.G. S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
17.1 99.6 GSM250900 TcLr34_3dpi_inoculated_rep3 GSE9915 Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
9.7 99.1 GSM250899 TcLr34_3dpi_mock_rep3 GSE9915 Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
8.7 98.9 GSM250895 Tc_3dpi_mock_rep3 GSE9915 Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
5.8 97.9 GSM250896 Tc_3dpi_inoculated_rep3 GSE9915 Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
5.3 97.6 GSM250898 TcLr1_3dpi_inoculated_rep3 GSE9915 Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
4.8 97.2 GSM250897 TcLr1_3dpi_mock_rep3 GSE9915 Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
4.0 96.3 GSM298092 Crown tissue of Solstice at 3 weeks post germination GSE11774 Expression data from cold treated wheat cultivars
3.5 95.4 GSM250908 Tc_7dpi_inoculated_rep2 GSE9915 Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
3.3 95.0 GSM298070 Leaf tissue of Paragon at 9 weeks post germination, biological rep 2 GSE11774 Expression data from cold treated wheat cultivars
3.0 94.3 GSM314269 tissue type: immature inflorescence - rep1 GSE12508 Transcription patterns during wheat development

Inter-species module comparison

A co-expression module including the poplar gene, PtpAffx.202417.1.S1_at, orthologous to the query gene, Ta.19063.1.S1_at

VF %ile Gene ID Repr. ID Gene Name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.92 99.3 PtpAffx.202417.1.S1_at At5g23290 hypothetical protein - 5e+0 At4g11630 ribosomal protein L19 family protein O.I. H.G. S.X.
0.27 47.1 PtpAffx.212309.1.S1_x_at At5g23290 hypothetical protein - 2e+0 At5g42990 UBC18 (ubiquitin-conjugating enzyme 18) O.I. H.G. S.X.
0.14 23.5 PtpAffx.104578.1.A1_at At5g23290 hypothetical protein - 4e-10 At2g20000 HBT (HOBBIT) O.I. H.G. S.X.
0.10 16.3 PtpAffx.220424.1.S1_x_at At5g23290 - - 1e-38 At1g48370 YSL8 (YELLOW STRIPE LIKE 8) O.I. H.G. S.X.
0.10 16.3 PtpAffx.204326.1.S1_s_at At5g23290 hypothetical protein - 4e-114 At5g40820 ATRAD3 O.I. H.G. S.X.
0.10 16.3 PtpAffx.219605.1.S1_at At5g23290 hypothetical protein - 2e-2 At1g58440 XF1 O.I. H.G. S.X.
0.08 12.9 PtpAffx.249.450.S1_at At5g23290 hypothetical protein - 1e+0 At1g52590 - O.I. H.G. S.X.
0.06 9.8 PtpAffx.204825.1.S1_x_at At5g23290 hypothetical protein - 9e-46 At3g52140 tetratricopeptide repeat (TPR)-containing protein O.I. H.G. S.X.
0.05 8.3 PtpAffx.35473.1.S1_a_at At5g23290 hypothetical protein - 3e-1 At3g23280 zinc finger (C3HC4-type RING finger) family protein / ankyrin repeat family protein O.I. H.G. S.X.
0.04 6.9 PtpAffx.202801.1.S1_x_at At5g23290 hypothetical protein - 6e-4 At1g10910 - O.I. H.G. S.X.
0.02 3.6 PtpAffx.219354.1.S1_at At5g23290 hypothetical protein - 7e+0 At4g30450 glycine-rich protein O.I. H.G. S.X.
0.02 3.6 PtpAffx.129242.1.S1_at At5g23290 hypothetical protein - 3e-10 At3g17800 - O.I. H.G. S.X.
0.01 2.2 PtpAffx.154516.1.A1_at At5g23290 cytochrome P450 - 8e+0 At5g65350 histone H3 O.I. H.G. S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Vitis_vinifera
Zea_mays

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