CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Ta.19063.1.S1_at

Gene name
Homology with Arabidopsis Similar to At5g23290: PDF5 (PREFOLDIN 5) (HF=4e+0)

Module size 6 genes

NF 0.10

%ile 22.0

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.63 83.1 0.93 Ta.19063.1.S1_at CA646746 - - 4e+0 At5g23290 PDF5 (PREFOLDIN 5) O.I. H.G. S.X.
0.40 58.4 0.94 TaAffx.59306.1.S1_at CA603735 - - 1e+0 At4g22570 APT3 (ADENINE PHOSPHORIBOSYL TRANSFERASE 3) O.I. H.G. S.X.
0.19 22.4 0.94 TaAffx.112465.1.S1_s_at CA623726 - - 3e-13 At4g00360 CYP86A2 (CYTOCHROME P450 86 A2) O.I. H.G. S.X.
0.14 15.8 0.94 TaAffx.64591.1.S1_at BJ288225 - - 1e+0 At1g19010 unknown protein O.I. H.G. S.X.
0.05 6.7 0.93 TaAffx.50210.1.S1_at CA744417 - - 7e-2 At1g60880 AGL56 O.I. H.G. S.X.
0.04 5.8 0.93 TaAffx.31313.1.S1_at CA617546 - - 1e+1 At3g52561 unknown protein O.I. H.G. S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
17.1 99.6 GSM250900 TcLr34_3dpi_inoculated_rep3 GSE9915 Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
9.7 99.1 GSM250899 TcLr34_3dpi_mock_rep3 GSE9915 Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
8.7 98.9 GSM250895 Tc_3dpi_mock_rep3 GSE9915 Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
5.8 97.9 GSM250896 Tc_3dpi_inoculated_rep3 GSE9915 Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
5.3 97.6 GSM250898 TcLr1_3dpi_inoculated_rep3 GSE9915 Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
4.8 97.2 GSM250897 TcLr1_3dpi_mock_rep3 GSE9915 Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
4.0 96.3 GSM298092 Crown tissue of Solstice at 3 weeks post germination GSE11774 Expression data from cold treated wheat cultivars
3.5 95.4 GSM250908 Tc_7dpi_inoculated_rep2 GSE9915 Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
3.3 95.0 GSM298070 Leaf tissue of Paragon at 9 weeks post germination, biological rep 2 GSE11774 Expression data from cold treated wheat cultivars
3.0 94.3 GSM314269 tissue type: immature inflorescence - rep1 GSE12508 Transcription patterns during wheat development

Inter-species module comparison

A co-expression module including the rice gene, Os01g0600600, orthologous to the query gene, Ta.19063.1.S1_at

VF %ile Gene ID Repr. ID Gene Name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.71 89.6 Os01g0600600 At5g23290 - - 6e-2 At2g45440 DHDPS2 (DIHYDRODIPICOLINATE SYNTHASE) O.I. H.G. S.X.
0.77 93.1 Os09g0494001 At5g23290 - - 2e-1 At2g39855 unknown protein O.I. H.G. S.X.
0.67 87.2 Os06g0106200 At5g23290 - - 2e+0 At5g22280 unknown protein O.I. H.G. S.X.
0.67 87.2 Os06g0344500 At5g23290 - - 3e+0 At5g59030 COPT1 (copper transporter 1) O.I. H.G. S.X.
0.64 83.4 Os11g0142950 At5g23290 - - 3e-1 At2g25130 armadillo/beta-catenin repeat family protein O.I. H.G. S.X.
0.57 77.0 Os12g0527400 At5g23290 - - 8e-1 At4g05400 unknown protein O.I. H.G. S.X.
0.56 76.3 Os12g0275500 At5g23290 - Hypothetical protein 4e-1 At4g10480 nascent polypeptide associated complex alpha chain protein, putative / alpha-NAC, putative O.I. H.G. S.X.
0.56 76.3 Os08g0368300 At5g23290 - - 3e+0 At4g10720 ankyrin repeat family protein O.I. H.G. S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Vitis_vinifera
Zea_mays

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