Co-expression analysis

Gene ID	Ta.1905.3.S1_at
Gene name
Homology with Arabidopsis	Similar to At5g06460: ATUBA2 (HF=2e-2)
Module size	10 genes
NF	0.11
%ile	23.9

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.86	94.1	0.86	Ta.1905.3.S1_at	BJ282136	-	-	2e-2	At5g06460	ATUBA2	O.I.	H.G.	S.X.	Please select
0.40	58.4	0.92	TaAffx.87030.1.S1_at	CA597041	-	-	2e-26	At4g36080	FAT domain-containing protein / phosphatidylinositol 3- and 4-kinase family protein	O.I.	H.G.	S.X.	Please select
0.30	40.9	0.93	Ta.23800.2.S1_at	BJ207557	-	-	2e-16	At1g05910	cell division cycle protein 48-related / CDC48-related	O.I.	H.G.	S.X.	Please select
0.17	19.8	0.94	TaAffx.122554.1.S1_at	BE499458	-	-	5e+0	At4g02770	PSAD-1 (photosystem I subunit D-1)	O.I.	H.G.	S.X.	Please select
0.14	15.8	0.95	Ta.27388.1.S1_at	CK166653	-	-	6e-10	At5g09860	nuclear matrix protein-related	O.I.	H.G.	S.X.	Please select
0.10	11.3	0.94	TaAffx.124136.1.S1_at	CA695442	-	-	1e-5	At5g49830	-	O.I.	H.G.	S.X.	Please select
0.08	9.4	0.91	TaAffx.91426.1.A1_at	BJ319043	-	-	4e-25	At2g46020	transcription regulatory protein SNF2, putative	O.I.	H.G.	S.X.	Please select
0.07	8.6	0.93	TaAffx.114922.1.S1_at	CA726912	-	-	7e-2	At5g17650	glycine/proline-rich protein	O.I.	H.G.	S.X.	Please select
0.06	7.6	0.93	Ta.5855.10.S1_x_at	AY230405.1	FCA-A1	-	7e-1	At3g16070	unknown protein	O.I.	H.G.	S.X.	Please select
0.04	5.8	0.91	TaAffx.31608.1.S1_x_at	CA611972	-	-	9e-1	At2g36026	-	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
20.3	99.7	GSM315203	target strand labeled: Antisense - rep1	GSE12528	Wheat "Chinese Spring" natural antisense transcription survey
6.9	98.4	GSM139928	Anther immature pollen rep1	GSE6027	Microarray expression analysis of meiosis and microsporogenesis in hexaploid bread wheat
4.5	96.9	GSM298070	Leaf tissue of Paragon at 9 weeks post germination, biological rep 2	GSE11774	Expression data from cold treated wheat cultivars
4.5	96.9	GSM298092	Crown tissue of Solstice at 3 weeks post germination	GSE11774	Expression data from cold treated wheat cultivars
3.1	94.5	GSM111233	genotype H8 developing seed at 5 days after anthesis, biological rep2	GSE4935	wheat expression level polymorphism study 39 genotypes 2 biological reps
3.0	94.3	GSM139917	Anther leptotene-pachytene rep2	GSE6027	Microarray expression analysis of meiosis and microsporogenesis in hexaploid bread wheat
2.6	92.9	GSM250895	Tc_3dpi_mock_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
2.6	92.9	GSM250900	TcLr34_3dpi_inoculated_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
2.5	92.5	GSM298071	Crown tissue of Paragon at 3 weeks post germination, biological rep 1	GSE11774	Expression data from cold treated wheat cultivars
2.4	92.0	GSM298062	Crown tissue of Harnesk at 5 weeks post germination, biological rep 2	GSE11774	Expression data from cold treated wheat cultivars

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Vitis_vinifera

Zea_mays

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