CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Ta.18801.1.S1_at

Gene name
Homology with Arabidopsis Similar to At2g47540: pollen Ole e 1 allergen and extensin family protein (HF=1e-1)

Module size 7 genes

NF 0.39

%ile 62.3

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.67 86.3 0.82 Ta.18801.1.S1_at CA642342 - - 1e-1 At2g47540 pollen Ole e 1 allergen and extensin family protein O.I. H.G. S.X.
0.60 81.0 0.89 Ta.7882.1.S1_at BQ160849 - - 2e+0 At4g16750 DRE-binding transcription factor, putative O.I. H.G. S.X.
0.47 67.9 0.89 Ta.18807.1.A1_at CA642371 - - 8e-2 At3g48460 GDSL-motif lipase/hydrolase family protein O.I. H.G. S.X.
0.35 49.8 0.88 Ta.7882.1.S1_x_at BQ160849 - - 2e+0 At4g16750 DRE-binding transcription factor, putative O.I. H.G. S.X.
0.33 46.9 0.85 Ta.7882.2.S1_a_at CA645408 - - 1e+0 At2g04790 unknown protein O.I. H.G. S.X.
0.31 42.7 0.90 Ta.1800.1.S1_at BE445382 - - 4e+0 At3g55646 unknown protein O.I. H.G. S.X.
0.20 24.0 0.84 Ta.21013.1.S1_at CA641421 - - 9e-2 At1g06475 unknown protein O.I. H.G. S.X.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.
0.67	86.3	0.82	Ta.18801.1.S1_at	CA642342	-	-	1e-1	At2g47540	pollen Ole e 1 allergen and extensin family protein	O.I.	H.G.	S.X.
0.60	81.0	0.89	Ta.7882.1.S1_at	BQ160849	-	-	2e+0	At4g16750	DRE-binding transcription factor, putative	O.I.	H.G.	S.X.
0.47	67.9	0.89	Ta.18807.1.A1_at	CA642371	-	-	8e-2	At3g48460	GDSL-motif lipase/hydrolase family protein	O.I.	H.G.	S.X.
0.35	49.8	0.88	Ta.7882.1.S1_x_at	BQ160849	-	-	2e+0	At4g16750	DRE-binding transcription factor, putative	O.I.	H.G.	S.X.
0.33	46.9	0.85	Ta.7882.2.S1_a_at	CA645408	-	-	1e+0	At2g04790	unknown protein	O.I.	H.G.	S.X.
0.31	42.7	0.90	Ta.1800.1.S1_at	BE445382	-	-	4e+0	At3g55646	unknown protein	O.I.	H.G.	S.X.
0.20	24.0	0.84	Ta.21013.1.S1_at	CA641421	-	-	9e-2	At1g06475	unknown protein	O.I.	H.G.	S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
19.7 99.7 GSM314262 tissue type: seedling, root - rep3 GSE12508 Transcription patterns during wheat development
17.1 99.6 GSM314261 tissue type: seedling, root - rep2 GSE12508 Transcription patterns during wheat development
13.8 99.5 GSM314260 tissue type: seedling, root - rep1 GSE12508 Transcription patterns during wheat development
9.3 99.0 GSM343688 Wheat var. Kennedy_Fp inoculated_rep3 GSE13660 Gene expression analysis of the wheat response to infection by Fusarium pseudograminearum
8.2 98.8 GSM343687 Wheat var. Kennedy_Fp inoculated_rep2 GSE13660 Gene expression analysis of the wheat response to infection by Fusarium pseudograminearum
6.5 98.3 GSM343682 Wheat var. Kennedy_control_rep2 GSE13660 Gene expression analysis of the wheat response to infection by Fusarium pseudograminearum
6.5 98.3 GSM343678 Wheat var. Kennedy_control_rep1 GSE13660 Gene expression analysis of the wheat response to infection by Fusarium pseudograminearum
6.1 98.1 GSM298072 Crown tissue of Paragon at 3 weeks post germination, biological rep 2 GSE11774 Expression data from cold treated wheat cultivars
4.8 97.2 GSM314264 tissue type: seedling, crown - rep2 GSE12508 Transcription patterns during wheat development
4.7 97.1 GSM314265 tissue type: seedling, crown - rep3 GSE12508 Transcription patterns during wheat development

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title
19.7	99.7	GSM314262	tissue type: seedling, root - rep3	GSE12508	Transcription patterns during wheat development
17.1	99.6	GSM314261	tissue type: seedling, root - rep2	GSE12508	Transcription patterns during wheat development
13.8	99.5	GSM314260	tissue type: seedling, root - rep1	GSE12508	Transcription patterns during wheat development
9.3	99.0	GSM343688	Wheat var. Kennedy_Fp inoculated_rep3	GSE13660	Gene expression analysis of the wheat response to infection by Fusarium pseudograminearum
8.2	98.8	GSM343687	Wheat var. Kennedy_Fp inoculated_rep2	GSE13660	Gene expression analysis of the wheat response to infection by Fusarium pseudograminearum
6.5	98.3	GSM343682	Wheat var. Kennedy_control_rep2	GSE13660	Gene expression analysis of the wheat response to infection by Fusarium pseudograminearum
6.5	98.3	GSM343678	Wheat var. Kennedy_control_rep1	GSE13660	Gene expression analysis of the wheat response to infection by Fusarium pseudograminearum
6.1	98.1	GSM298072	Crown tissue of Paragon at 3 weeks post germination, biological rep 2	GSE11774	Expression data from cold treated wheat cultivars
4.8	97.2	GSM314264	tissue type: seedling, crown - rep2	GSE12508	Transcription patterns during wheat development
4.7	97.1	GSM314265	tissue type: seedling, crown - rep3	GSE12508	Transcription patterns during wheat development

Inter-species module comparison

A co-expression module including the rice gene, Os05g0531200, orthologous to the query gene, Ta.18801.1.S1_at

VF %ile Gene ID Repr. ID Gene Name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.91 98.9 Os05g0531200 At2g47540 - Pollen Ole e 1 allergen and extensin domaincontaining protein 2e+0 At5g61412 unknown protein O.I. H.G. S.X.
0.55 73.7 Os01g0264400 At2g47540 - Conserved hypothetical protein 2e-4 At3g10040 transcription factor O.I. H.G. S.X.
0.52 69.6 Os06g0149700 At2g47540 - Cysteine synthase (EC 4.2.99.8) 6e-1 At5g28030 cysteine synthase, putative / O-acetylserine (thiol)-lyase, putative / O-acetylserine sulfhydrylase, putative O.I. H.G. S.X.
0.49 64.4 Os10g0454200 At2g47540 - Hypothetical protein 3e-2 At2g30560 glycine-rich protein O.I. H.G. S.X.
0.46 60.9 Os08g0159700 At2g47540 - Protein of unknown function DUF296 domaincontaining protein 6e-1 At2g41225 unknown protein O.I. H.G. S.X.
0.42 53.9 Os02g0256200 At2g47540 - Conserved hypothetical protein 1e-1 At5g67060 HEC1 (HECATE 1) O.I. H.G. S.X.
0.42 53.9 Os10g0547500 At2g47540 - Conserved hypothetical protein 7e-5 At1g02260 transmembrane protein, putative O.I. H.G. S.X.
0.41 52.4 Os10g0552800 At2g47540 - RCc3 protein 9e-2 At2g25820 transcription factor O.I. H.G. S.X.
0.40 51.1 Os02g0131800 At2g47540 - Root-specific metal transporter 2e-1 At5g09820 plastid-lipid associated protein PAP / fibrillin family protein O.I. H.G. S.X.
0.40 51.1 Os01g0284500 At2g47540 - Nectarin 1 precursor (EC 1.15.1.1) (Superoxidedismutase [Mn]) 7e-3 At1g02335 GL22 (GERMIN-LIKE PROTEIN SUBFAMILY 2 MEMBER 2 PRECURSOR.) O.I. H.G. S.X.
0.39 48.3 Os11g0514800 At2g47540 - Hypothetical protein 4e-3 At5g14020 - O.I. H.G. S.X.
0.37 45.0 Os05g0399200 At2g47540 - Endo-1,3;1,4-beta-D-glucanase precursor (EC3.2.1.-) 2e-3 At3g23600 dienelactone hydrolase family protein O.I. H.G. S.X.
0.36 44.0 Os03g0247200 At2g47540 - Hypothetical protein 6e+0 At4g09960 STK (SEEDSTICK) O.I. H.G. S.X.
0.35 41.7 Os02g0662000 At2g47540 - RCc3 protein 1e-1 At2g25820 transcription factor O.I. H.G. S.X.
0.35 41.7 Os10g0169200 At2g47540 - Conserved hypothetical protein 4e+0 At4g21480 carbohydrate transmembrane transporter/ sugar:hydrogen symporter O.I. H.G. S.X.
0.35 41.7 Os03g0563600 At2g47540 - Peroxidase 56 precursor (EC 1.11.1.7) (AtperoxP56) (ATP33) 2e-1 At5g15180 peroxidase, putative O.I. H.G. S.X.
0.34 40.0 Os01g0803300 At2g47540 - Protein of unknown function DUF6 domain containingprotein 9e-13 At5g07050 - O.I. H.G. S.X.
0.31 34.5 Os01g0866000 At2g47540 - RING finger protein 12 (LIM domain interactingRING finger protein) (RING finger LIM domain-bindingprotein) (R-LIM) 7e+0 At1g77930 DNAJ heat shock N-terminal domain-containing protein O.I. H.G. S.X.
0.30 32.7 Os02g0579600 At2g47540 - Transcription factor MADS27 7e-19 At3g57230 AGL16 (AGAMOUS-LIKE 16) O.I. H.G. S.X.
0.29 31.1 Os12g0581900 At2g47540 - Zn-finger, C2H2 type domain containing protein 8e-3 At5g06650 GIS2 (GLABROUS INFLORESCENCE STEMS 2) O.I. H.G. S.X.
0.29 31.1 Os04g0188500 At2g47540 - Hypothetical protein 6e-1 At2g18870 VEL3 (VERNALIZATION5/VIN3-LIKE) O.I. H.G. S.X.
0.28 31.1 Os02g0768300 At2g47540 - Protein of unknown function DUF6 domain containingprotein 2e-4 At1g21890 nodulin MtN21 family protein O.I. H.G. S.X.
0.26 25.6 Os10g0390600 At2g47540 - 1-aminocyclopropane-1-carboxylate synthase familyprotein 4e-7 At1g72330 ALAAT2 (ALANINE AMINOTRANSFERASE 2) O.I. H.G. S.X.
0.18 13.7 Os09g0249000 At2g47540 - - 6e-1 At1g11220 unknown protein O.I. H.G. S.X.
0.16 11.3 Os01g0667200 At2g47540 - Glyoxalase II 6e-17 At1g53580 GLY3 (GLYOXALASE II 3) O.I. H.G. S.X.
0.14 9.3 Os02g0648100 At2g47540 - Protein kinase domain containing protein 1e-2 At3g13065 SRF4 (STRUBBELIG-RECEPTOR FAMILY 4) O.I. H.G. S.X.

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.
0.91	98.9	Os05g0531200	At2g47540	-	Pollen Ole e 1 allergen and extensin domaincontaining protein	2e+0	At5g61412	unknown protein	O.I.	H.G.	S.X.
0.55	73.7	Os01g0264400	At2g47540	-	Conserved hypothetical protein	2e-4	At3g10040	transcription factor	O.I.	H.G.	S.X.
0.52	69.6	Os06g0149700	At2g47540	-	Cysteine synthase (EC 4.2.99.8)	6e-1	At5g28030	cysteine synthase, putative / O-acetylserine (thiol)-lyase, putative / O-acetylserine sulfhydrylase, putative	O.I.	H.G.	S.X.
0.49	64.4	Os10g0454200	At2g47540	-	Hypothetical protein	3e-2	At2g30560	glycine-rich protein	O.I.	H.G.	S.X.
0.46	60.9	Os08g0159700	At2g47540	-	Protein of unknown function DUF296 domaincontaining protein	6e-1	At2g41225	unknown protein	O.I.	H.G.	S.X.
0.42	53.9	Os02g0256200	At2g47540	-	Conserved hypothetical protein	1e-1	At5g67060	HEC1 (HECATE 1)	O.I.	H.G.	S.X.
0.42	53.9	Os10g0547500	At2g47540	-	Conserved hypothetical protein	7e-5	At1g02260	transmembrane protein, putative	O.I.	H.G.	S.X.
0.41	52.4	Os10g0552800	At2g47540	-	RCc3 protein	9e-2	At2g25820	transcription factor	O.I.	H.G.	S.X.
0.40	51.1	Os02g0131800	At2g47540	-	Root-specific metal transporter	2e-1	At5g09820	plastid-lipid associated protein PAP / fibrillin family protein	O.I.	H.G.	S.X.
0.40	51.1	Os01g0284500	At2g47540	-	Nectarin 1 precursor (EC 1.15.1.1) (Superoxidedismutase [Mn])	7e-3	At1g02335	GL22 (GERMIN-LIKE PROTEIN SUBFAMILY 2 MEMBER 2 PRECURSOR.)	O.I.	H.G.	S.X.
0.39	48.3	Os11g0514800	At2g47540	-	Hypothetical protein	4e-3	At5g14020	-	O.I.	H.G.	S.X.
0.37	45.0	Os05g0399200	At2g47540	-	Endo-1,3;1,4-beta-D-glucanase precursor (EC3.2.1.-)	2e-3	At3g23600	dienelactone hydrolase family protein	O.I.	H.G.	S.X.
0.36	44.0	Os03g0247200	At2g47540	-	Hypothetical protein	6e+0	At4g09960	STK (SEEDSTICK)	O.I.	H.G.	S.X.
0.35	41.7	Os02g0662000	At2g47540	-	RCc3 protein	1e-1	At2g25820	transcription factor	O.I.	H.G.	S.X.
0.35	41.7	Os10g0169200	At2g47540	-	Conserved hypothetical protein	4e+0	At4g21480	carbohydrate transmembrane transporter/ sugar:hydrogen symporter	O.I.	H.G.	S.X.
0.35	41.7	Os03g0563600	At2g47540	-	Peroxidase 56 precursor (EC 1.11.1.7) (AtperoxP56) (ATP33)	2e-1	At5g15180	peroxidase, putative	O.I.	H.G.	S.X.
0.34	40.0	Os01g0803300	At2g47540	-	Protein of unknown function DUF6 domain containingprotein	9e-13	At5g07050	-	O.I.	H.G.	S.X.
0.31	34.5	Os01g0866000	At2g47540	-	RING finger protein 12 (LIM domain interactingRING finger protein) (RING finger LIM domain-bindingprotein) (R-LIM)	7e+0	At1g77930	DNAJ heat shock N-terminal domain-containing protein	O.I.	H.G.	S.X.
0.30	32.7	Os02g0579600	At2g47540	-	Transcription factor MADS27	7e-19	At3g57230	AGL16 (AGAMOUS-LIKE 16)	O.I.	H.G.	S.X.
0.29	31.1	Os12g0581900	At2g47540	-	Zn-finger, C2H2 type domain containing protein	8e-3	At5g06650	GIS2 (GLABROUS INFLORESCENCE STEMS 2)	O.I.	H.G.	S.X.
0.29	31.1	Os04g0188500	At2g47540	-	Hypothetical protein	6e-1	At2g18870	VEL3 (VERNALIZATION5/VIN3-LIKE)	O.I.	H.G.	S.X.
0.28	31.1	Os02g0768300	At2g47540	-	Protein of unknown function DUF6 domain containingprotein	2e-4	At1g21890	nodulin MtN21 family protein	O.I.	H.G.	S.X.
0.26	25.6	Os10g0390600	At2g47540	-	1-aminocyclopropane-1-carboxylate synthase familyprotein	4e-7	At1g72330	ALAAT2 (ALANINE AMINOTRANSFERASE 2)	O.I.	H.G.	S.X.
0.18	13.7	Os09g0249000	At2g47540	-	-	6e-1	At1g11220	unknown protein	O.I.	H.G.	S.X.
0.16	11.3	Os01g0667200	At2g47540	-	Glyoxalase II	6e-17	At1g53580	GLY3 (GLYOXALASE II 3)	O.I.	H.G.	S.X.
0.14	9.3	Os02g0648100	At2g47540	-	Protein kinase domain containing protein	1e-2	At3g13065	SRF4 (STRUBBELIG-RECEPTOR FAMILY 4)	O.I.	H.G.	S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Vitis_vinifera
Zea_mays

Back to the CoP portal site

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Gene ID	Ta.18801.1.S1_at
Gene name
Homology with Arabidopsis	Similar to At2g47540: pollen Ole e 1 allergen and extensin family protein (HF=1e-1)
Module size	7 genes
NF	0.39
%ile	62.3

Co-expression analysis

Gene ID Ta.18801.1.S1_at Gene name Homology with ArabidopsisSimilar to At2g47540: pollen Ole e 1 allergen and extensin family protein (HF=1e-1) Module size 7 genes NF 0.39 %ile 62.3

Co-expressed genes

Click More genes

Specific experiments for the module

Inter-species module comparison

Select a plant to compare co-expressed genes between species.Arabidopsis_thalianaGlycine_maxHordeum_vulgarePopulus_trichocarpaVitis_viniferaZea_mays

Gene ID Ta.18801.1.S1_at

Gene name
Homology with Arabidopsis Similar to At2g47540: pollen Ole e 1 allergen and extensin family protein (HF=1e-1)

Module size 7 genes

NF 0.39

%ile 62.3

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Vitis_vinifera
Zea_mays