Co-expression analysis

Gene ID	Ta.18801.1.S1_at
Gene name
Homology with Arabidopsis	Similar to At2g47540: pollen Ole e 1 allergen and extensin family protein (HF=1e-1)
Module size	7 genes
NF	0.39
%ile	62.3

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.67	86.3	0.82	Ta.18801.1.S1_at	CA642342	-	-	1e-1	At2g47540	pollen Ole e 1 allergen and extensin family protein	O.I.	H.G.	S.X.	Please select
0.60	81.0	0.89	Ta.7882.1.S1_at	BQ160849	-	-	2e+0	At4g16750	DRE-binding transcription factor, putative	O.I.	H.G.	S.X.	Please select
0.47	67.9	0.89	Ta.18807.1.A1_at	CA642371	-	-	8e-2	At3g48460	GDSL-motif lipase/hydrolase family protein	O.I.	H.G.	S.X.	Please select
0.35	49.8	0.88	Ta.7882.1.S1_x_at	BQ160849	-	-	2e+0	At4g16750	DRE-binding transcription factor, putative	O.I.	H.G.	S.X.	Please select
0.33	46.9	0.85	Ta.7882.2.S1_a_at	CA645408	-	-	1e+0	At2g04790	unknown protein	O.I.	H.G.	S.X.	Please select
0.31	42.7	0.90	Ta.1800.1.S1_at	BE445382	-	-	4e+0	At3g55646	unknown protein	O.I.	H.G.	S.X.	Please select
0.20	24.0	0.84	Ta.21013.1.S1_at	CA641421	-	-	9e-2	At1g06475	unknown protein	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
19.7	99.7	GSM314262	tissue type: seedling, root - rep3	GSE12508	Transcription patterns during wheat development
17.1	99.6	GSM314261	tissue type: seedling, root - rep2	GSE12508	Transcription patterns during wheat development
13.8	99.5	GSM314260	tissue type: seedling, root - rep1	GSE12508	Transcription patterns during wheat development
9.3	99.0	GSM343688	Wheat var. Kennedy_Fp inoculated_rep3	GSE13660	Gene expression analysis of the wheat response to infection by Fusarium pseudograminearum
8.2	98.8	GSM343687	Wheat var. Kennedy_Fp inoculated_rep2	GSE13660	Gene expression analysis of the wheat response to infection by Fusarium pseudograminearum
6.5	98.3	GSM343682	Wheat var. Kennedy_control_rep2	GSE13660	Gene expression analysis of the wheat response to infection by Fusarium pseudograminearum
6.5	98.3	GSM343678	Wheat var. Kennedy_control_rep1	GSE13660	Gene expression analysis of the wheat response to infection by Fusarium pseudograminearum
6.1	98.1	GSM298072	Crown tissue of Paragon at 3 weeks post germination, biological rep 2	GSE11774	Expression data from cold treated wheat cultivars
4.8	97.2	GSM314264	tissue type: seedling, crown - rep2	GSE12508	Transcription patterns during wheat development
4.7	97.1	GSM314265	tissue type: seedling, crown - rep3	GSE12508	Transcription patterns during wheat development

Inter-species module comparison

A co-expression module including the barley gene, Contig14215_at, orthologous to the query gene, Ta.18801.1.S1_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	98.1	Contig14215_at	At2g47540	-	-	4e+0	At3g18740	60S ribosomal protein L30 (RPL30C)	O.I.	H.G.	S.X.	Please select
0.40	53.1	Contig8877_at	At2g47540	-	-	1e+0	At5g19630	unknown protein	O.I.	H.G.	S.X.	Please select
0.33	42.6	Contig5702_at	At2g47540	-	-	2e+0	At2g35950	EDA12 (embryo sac development arrest 12)	O.I.	H.G.	S.X.	Please select
0.25	28.9	Contig14761_at	At2g47540	-	-	2e-1	At5g64080	protease inhibitor/seed storage/lipid transfer protein (LTP) family protein	O.I.	H.G.	S.X.	Please select
0.25	28.9	Contig4869_s_at	At2g47540	-	-	1e+0	At1g52540	protein kinase, putative	O.I.	H.G.	S.X.	Please select
0.25	28.9	Contig14368_at	At2g47540	-	-	2e-4	At1g71990	FUT13 (FUCOSYLTRANSFERASE 13)	O.I.	H.G.	S.X.	Please select
0.24	27.2	Contig17063_at	At2g47540	-	-	5e-16	At1g65650	UCH2	O.I.	H.G.	S.X.	Please select
0.23	26.1	Contig10065_at	At2g47540	-	-	3e+0	Atmg01260	-	O.I.	H.G.	S.X.	Please select
0.22	24.2	HVSMEn0025O19r2_at	At2g47540	-	-	4e+0	At5g53120	SPDS3 (SPERMIDINE SYNTHASE 3)	O.I.	H.G.	S.X.	Please select
0.22	24.2	HY08N07u_s_at	At2g47540	-	-	4e+0	At3g28870	-	O.I.	H.G.	S.X.	Please select
0.22	24.2	Contig12181_at	At2g47540	-	-	1e-1	At1g30660	nucleic acid binding	O.I.	H.G.	S.X.	Please select
0.22	24.2	Contig15422_at	At2g47540	-	-	2e-1	At3g10585	myb family transcription factor / I-box binding factor-related protein	O.I.	H.G.	S.X.	Please select
0.21	22.6	Contig9198_at	At2g47540	-	-	1e-22	At3g03940	protein kinase family protein	O.I.	H.G.	S.X.	Please select
0.20	21.1	HVSMEi0013P23r2_at	At2g47540	-	-	6e-1	At5g03830	-	O.I.	H.G.	S.X.	Please select
0.20	21.1	Contig10615_at	At2g47540	-	-	2e+0	At5g60840	unknown protein	O.I.	H.G.	S.X.	Please select
0.20	21.1	HU05L13u_at	At2g47540	-	-	2e-1	At2g39445	-	O.I.	H.G.	S.X.	Please select
0.19	19.6	Contig4475_at	At2g47540	-	-	1e-1	At1g71840	transducin family protein / WD-40 repeat family protein	O.I.	H.G.	S.X.	Please select
0.18	18.2	Contig692_s_at	At2g47540	-	-	1e-17	At4g36130	60S ribosomal protein L8 (RPL8C)	O.I.	H.G.	S.X.	Please select
0.17	16.9	Contig7984_s_at	At2g47540	-	-	3e-1	At5g65640	bHLH093 (beta HLH protein 93)	O.I.	H.G.	S.X.	Please select
0.16	15.3	Contig16658_at	At2g47540	-	-	6e+0	At3g27820	MDAR4 (MONODEHYDROASCORBATE REDUCTASE 4)	O.I.	H.G.	S.X.	Please select
0.16	15.3	Contig12407_at	At2g47540	-	-	7e-1	At2g44130	kelch repeat-containing F-box family protein	O.I.	H.G.	S.X.	Please select
0.16	15.3	Contig6706_at	At2g47540	-	-	1e-1	At2g18480	mannitol transporter, putative	O.I.	H.G.	S.X.	Please select
0.16	15.3	Contig8943_at	At2g47540	-	-	1e-6	At1g75990	26S proteasome regulatory subunit S3, putative (RPN3)	O.I.	H.G.	S.X.	Please select
0.15	14.1	Contig11726_at	At2g47540	-	-	9e-10	At4g33140	unknown protein	O.I.	H.G.	S.X.	Please select
0.15	14.1	Contig6546_at	At2g47540	-	-	8e+0	At5g02780	In2-1 protein, putative	O.I.	H.G.	S.X.	Please select
0.15	14.1	Contig24993_at	At2g47540	-	-	8e-2	At4g33730	pathogenesis-related protein, putative	O.I.	H.G.	S.X.	Please select
0.14	12.9	Contig17728_at	At2g47540	-	-	2e+0	At3g21510	AHP1 (HISTIDINE-CONTAINING PHOSPHOTRANSMITTER 1)	O.I.	H.G.	S.X.	Please select
0.14	12.9	Contig14242_at	At2g47540	-	-	1e+0	At5g42800	DFR (DIHYDROFLAVONOL 4-REDUCTASE)	O.I.	H.G.	S.X.	Please select
0.14	12.9	Contig3707_at	At2g47540	-	-	1e-23	At1g16180	TMS membrane family protein / tumour differentially expressed (TDE) family protein	O.I.	H.G.	S.X.	Please select
0.11	9.4	Contig7446_at	At2g47540	-	-	3e-1	At4g24240	WRKY7	O.I.	H.G.	S.X.	Please select
0.09	7.4	Contig8718_at	At2g47540	-	-	7e+0	Atmg00150	-	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Populus_trichocarpa

Vitis_vinifera

Zea_mays

Back to the CoP portal site

Back to the KAGIANA project homepage