CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Ta.18801.1.S1_at

Gene name
Homology with Arabidopsis Similar to At2g47540: pollen Ole e 1 allergen and extensin family protein (HF=1e-1)

Module size 7 genes

NF 0.39

%ile 62.3

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.67 86.3 0.82 Ta.18801.1.S1_at CA642342 - - 1e-1 At2g47540 pollen Ole e 1 allergen and extensin family protein O.I. H.G. S.X.
0.60 81.0 0.89 Ta.7882.1.S1_at BQ160849 - - 2e+0 At4g16750 DRE-binding transcription factor, putative O.I. H.G. S.X.
0.47 67.9 0.89 Ta.18807.1.A1_at CA642371 - - 8e-2 At3g48460 GDSL-motif lipase/hydrolase family protein O.I. H.G. S.X.
0.35 49.8 0.88 Ta.7882.1.S1_x_at BQ160849 - - 2e+0 At4g16750 DRE-binding transcription factor, putative O.I. H.G. S.X.
0.33 46.9 0.85 Ta.7882.2.S1_a_at CA645408 - - 1e+0 At2g04790 unknown protein O.I. H.G. S.X.
0.31 42.7 0.90 Ta.1800.1.S1_at BE445382 - - 4e+0 At3g55646 unknown protein O.I. H.G. S.X.
0.20 24.0 0.84 Ta.21013.1.S1_at CA641421 - - 9e-2 At1g06475 unknown protein O.I. H.G. S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
19.7 99.7 GSM314262 tissue type: seedling, root - rep3 GSE12508 Transcription patterns during wheat development
17.1 99.6 GSM314261 tissue type: seedling, root - rep2 GSE12508 Transcription patterns during wheat development
13.8 99.5 GSM314260 tissue type: seedling, root - rep1 GSE12508 Transcription patterns during wheat development
9.3 99.0 GSM343688 Wheat var. Kennedy_Fp inoculated_rep3 GSE13660 Gene expression analysis of the wheat response to infection by Fusarium pseudograminearum
8.2 98.8 GSM343687 Wheat var. Kennedy_Fp inoculated_rep2 GSE13660 Gene expression analysis of the wheat response to infection by Fusarium pseudograminearum
6.5 98.3 GSM343682 Wheat var. Kennedy_control_rep2 GSE13660 Gene expression analysis of the wheat response to infection by Fusarium pseudograminearum
6.5 98.3 GSM343678 Wheat var. Kennedy_control_rep1 GSE13660 Gene expression analysis of the wheat response to infection by Fusarium pseudograminearum
6.1 98.1 GSM298072 Crown tissue of Paragon at 3 weeks post germination, biological rep 2 GSE11774 Expression data from cold treated wheat cultivars
4.8 97.2 GSM314264 tissue type: seedling, crown - rep2 GSE12508 Transcription patterns during wheat development
4.7 97.1 GSM314265 tissue type: seedling, crown - rep3 GSE12508 Transcription patterns during wheat development

Inter-species module comparison

A co-expression module including the Arabidopsis gene, At2g47540, orthologous to the query gene, Ta.18801.1.S1_at

VF %ile Gene ID Repr. ID Gene Name Func. O.I. H.G. S.X. Other DB
1.00 100.0 At2g47540 819367 pollen Ole e 1 allergen and extensin family protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P O.I. H.G. S.X.
1.00 100.0 At5g49270 834987 SHV2 (SHAVEN 2) Involved in successfully establishing tip growth in root hairs. O.I. H.G. S.X.
0.91 95.6 At4g09990 826590 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;POB O.I. H.G. S.X.
0.80 89.8 At3g24670 822063 pectate lyase family protein F:pectate lyase activity;P:biological_process unknown;C:endomembrane system;PBFO O.I. H.G. S.X.
0.75 86.9 At2g34910 818056 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. H.G. S.X.
0.63 78.1 At1g01750 839281 ADF11 (ACTIN DEPOLYMERIZING FACTOR 11) F:actin binding;P:biological_process unknown;C:intracellular;MPOFB O.I. H.G. S.X.
0.61 76.7 At1g27740 839667 basic helix-loop-helix (bHLH) family protein F:transcription factor activity, DNA binding;P:regulation of transcription;C:nucleus;PFO O.I. H.G. S.X.

Select a plant to compare co-expressed genes between species.
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Vitis_vinifera
Zea_mays

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