Co-expression analysis

Gene ID	Ta.1862.2.S1_x_at
Gene name
Homology with Arabidopsis	Similar to At1g53400: unknown protein (HF=1e-12)
Module size	6 genes
NF	0.81
%ile	97.7

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.50	72.4	0.98	Ta.1862.2.S1_x_at	CA690286	-	-	1e-12	At1g53400	unknown protein	O.I.	H.G.	S.X.	Please select
0.91	98.2	0.97	Ta.6082.1.S1_x_at	BQ752961	-	-	5e-1	At3g07590	small nuclear ribonucleoprotein D1, putative / snRNP core protein D1, putative / Sm protein D1, putative	O.I.	H.G.	S.X.	Please select
0.83	93.4	0.97	Ta.6082.1.S1_at	BQ752961	-	-	5e-1	At3g07590	small nuclear ribonucleoprotein D1, putative / snRNP core protein D1, putative / Sm protein D1, putative	O.I.	H.G.	S.X.	Please select
0.80	92.2	0.97	Ta.7147.3.S1_x_at	BJ315882	-	-	5e-3	At3g54300	ATVAMP727 (VESICLE-ASSOCIATED MEMBRANE PROTEIN 727)	O.I.	H.G.	S.X.	Please select
0.73	89.1	0.97	Ta.7147.3.S1_a_at	BJ315882	-	-	5e-3	At3g54300	ATVAMP727 (VESICLE-ASSOCIATED MEMBRANE PROTEIN 727)	O.I.	H.G.	S.X.	Please select
0.61	82.0	0.97	Ta.7147.2.S1_at	CK161455	-	-	9e-9	At3g54300	ATVAMP727 (VESICLE-ASSOCIATED MEMBRANE PROTEIN 727)	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
13.4	99.5	GSM298071	Crown tissue of Paragon at 3 weeks post germination, biological rep 1	GSE11774	Expression data from cold treated wheat cultivars
12.4	99.4	GSM298072	Crown tissue of Paragon at 3 weeks post germination, biological rep 2	GSE11774	Expression data from cold treated wheat cultivars
7.8	98.7	GSM314284	tissue type: 22 DAP embryo - rep1	GSE12508	Transcription patterns during wheat development
6.8	98.4	GSM298076	Crown tissue of Paragon at 9 weeks post germination, biological rep 2	GSE11774	Expression data from cold treated wheat cultivars
4.5	96.9	GSM298075	Crown tissue of Paragon at 9 weeks post germination, biological rep 1	GSE11774	Expression data from cold treated wheat cultivars
3.5	95.4	GSM314286	tissue type: 22 DAP embryo - rep3	GSE12508	Transcription patterns during wheat development
3.3	95.0	GSM250914	Tc_7dpi_inoculated_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
3.2	94.8	GSM314285	tissue type: 22 DAP embryo - rep2	GSE12508	Transcription patterns during wheat development
3.1	94.5	GSM298092	Crown tissue of Solstice at 3 weeks post germination	GSE11774	Expression data from cold treated wheat cultivars
3.1	94.5	GSM250908	Tc_7dpi_inoculated_rep2	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat

Inter-species module comparison

A co-expression module including the maize gene, Zm.12084.1.A1_at, orthologous to the query gene, Ta.1862.2.S1_x_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.67	85.8	Zm.12084.1.A1_at	At1g53400	ubiquitin domain containing 1	-	3e-10	At5g45740	unknown protein	O.I.	H.G.	S.X.	Please select
0.60	77.8	Zm.18307.1.S1_at	At1g53400	-	-	8e-1	At5g19950	unknown protein	O.I.	H.G.	S.X.	Please select
0.56	74.4	Zm.15910.1.S1_at	At1g53400	hypothetical protein LOC100275290	-	6e+0	At1g34065	SAMC2 (S-adenosylmethionine carrier 2)	O.I.	H.G.	S.X.	Please select
0.55	71.6	Zm.12683.1.S1_at	At1g53400	TMV-MP30 binding protein 2C	-	2e-1	At5g24020	MIND	O.I.	H.G.	S.X.	Please select
0.44	55.7	Zm.9099.1.A1_at	At1g53400	-	-	1e+0	At3g08010	ATAB2	O.I.	H.G.	S.X.	Please select
0.24	19.8	Zm.5432.1.A1_at	At1g53400	-	-	9e-2	At1g07320	RPL4	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Vitis_vinifera

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