Co-expression analysis

Gene ID	Ta.1862.2.S1_x_at
Gene name
Homology with Arabidopsis	Similar to At1g53400: unknown protein (HF=1e-12)
Module size	6 genes
NF	0.81
%ile	97.7

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.50	72.4	0.98	Ta.1862.2.S1_x_at	CA690286	-	-	1e-12	At1g53400	unknown protein	O.I.	H.G.	S.X.	Please select
0.91	98.2	0.97	Ta.6082.1.S1_x_at	BQ752961	-	-	5e-1	At3g07590	small nuclear ribonucleoprotein D1, putative / snRNP core protein D1, putative / Sm protein D1, putative	O.I.	H.G.	S.X.	Please select
0.83	93.4	0.97	Ta.6082.1.S1_at	BQ752961	-	-	5e-1	At3g07590	small nuclear ribonucleoprotein D1, putative / snRNP core protein D1, putative / Sm protein D1, putative	O.I.	H.G.	S.X.	Please select
0.80	92.2	0.97	Ta.7147.3.S1_x_at	BJ315882	-	-	5e-3	At3g54300	ATVAMP727 (VESICLE-ASSOCIATED MEMBRANE PROTEIN 727)	O.I.	H.G.	S.X.	Please select
0.73	89.1	0.97	Ta.7147.3.S1_a_at	BJ315882	-	-	5e-3	At3g54300	ATVAMP727 (VESICLE-ASSOCIATED MEMBRANE PROTEIN 727)	O.I.	H.G.	S.X.	Please select
0.61	82.0	0.97	Ta.7147.2.S1_at	CK161455	-	-	9e-9	At3g54300	ATVAMP727 (VESICLE-ASSOCIATED MEMBRANE PROTEIN 727)	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
13.4	99.5	GSM298071	Crown tissue of Paragon at 3 weeks post germination, biological rep 1	GSE11774	Expression data from cold treated wheat cultivars
12.4	99.4	GSM298072	Crown tissue of Paragon at 3 weeks post germination, biological rep 2	GSE11774	Expression data from cold treated wheat cultivars
7.8	98.7	GSM314284	tissue type: 22 DAP embryo - rep1	GSE12508	Transcription patterns during wheat development
6.8	98.4	GSM298076	Crown tissue of Paragon at 9 weeks post germination, biological rep 2	GSE11774	Expression data from cold treated wheat cultivars
4.5	96.9	GSM298075	Crown tissue of Paragon at 9 weeks post germination, biological rep 1	GSE11774	Expression data from cold treated wheat cultivars
3.5	95.4	GSM314286	tissue type: 22 DAP embryo - rep3	GSE12508	Transcription patterns during wheat development
3.3	95.0	GSM250914	Tc_7dpi_inoculated_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
3.2	94.8	GSM314285	tissue type: 22 DAP embryo - rep2	GSE12508	Transcription patterns during wheat development
3.1	94.5	GSM298092	Crown tissue of Solstice at 3 weeks post germination	GSE11774	Expression data from cold treated wheat cultivars
3.1	94.5	GSM250908	Tc_7dpi_inoculated_rep2	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat

Inter-species module comparison

A co-expression module including the soybean gene, Gma.4123.1.S1_at, orthologous to the query gene, Ta.1862.2.S1_x_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.90	93.7	Gma.4123.1.S1_at	At1g53400	-	-	2e-21	At1g53400	unknown protein	O.I.	H.G.	S.X.	Please select
0.54	74.8	Gma.10672.2.S1_s_at	At1g53400	bZIP transcription factor bZIP41	-	2e-3	At3g62422	CPuORF3 (Conserved peptide upstream open reading frame 3)	O.I.	H.G.	S.X.	Please select
0.51	72.3	Gma.6542.1.S1_at	At1g53400	-	-	3e-20	At2g01690	binding	O.I.	H.G.	S.X.	Please select
0.47	66.6	Gma.8403.1.S1_at	At1g53400	-	-	1e+0	At4g09640	-	O.I.	H.G.	S.X.	Please select
0.43	60.6	GmaAffx.86242.1.S1_s_at	At1g53400	-	-	1e-1	At5g19260	unknown protein	O.I.	H.G.	S.X.	Please select
0.39	54.5	Gma.8141.1.A1_at	At1g53400	-	-	3e-11	At5g64500	membrane protein-related	O.I.	H.G.	S.X.	Please select
0.38	53.3	GmaAffx.22346.3.S1_at	At1g53400	-	-	1e+0	At4g08555	unknown protein	O.I.	H.G.	S.X.	Please select
0.32	43.7	Gma.587.1.S1_at	At1g53400	catalase	-	4e-117	At4g35090	CAT2 (CATALASE 2)	O.I.	H.G.	S.X.	Please select
0.31	42.2	GmaAffx.86595.1.S1_at	At1g53400	-	-	1e-8	At1g56170	NF-YC2 (NUCLEAR FACTOR Y, SUBUNIT C2)	O.I.	H.G.	S.X.	Please select
0.29	39.0	GmaAffx.90193.1.S1_s_at	At1g53400	-	-	8e-21	At4g31170	protein kinase family protein	O.I.	H.G.	S.X.	Please select
0.26	33.9	Gma.2787.1.S1_s_at	At1g53400	-	-	6e-17	At1g10290	ADL6 (DYNAMIN-LIKE PROTEIN 6)	O.I.	H.G.	S.X.	Please select
0.24	30.9	Gma.7674.1.A1_at	At1g53400	-	-	3e-36	At2g20130	LCV1 (LIKE COV 1)	O.I.	H.G.	S.X.	Please select
0.23	29.9	Gma.6207.1.S1_s_at	At1g53400	-	-	7e-16	At4g19640	ARA7	O.I.	H.G.	S.X.	Please select
0.23	29.9	GmaAffx.8999.1.S1_at	At1g53400	-	-	1e-32	At5g25760	PEX4 (PEROXIN4)	O.I.	H.G.	S.X.	Please select
0.22	28.1	Gma.8245.1.S1_at	At1g53400	-	-	1e-1	At5g35080	protein binding	O.I.	H.G.	S.X.	Please select
0.21	26.6	GmaAffx.91605.1.S1_at	At1g53400	-	-	3e-1	At1g10290	ADL6 (DYNAMIN-LIKE PROTEIN 6)	O.I.	H.G.	S.X.	Please select
0.20	25.1	GmaAffx.8927.1.S1_at	At1g53400	-	-	5e-32	At4g39100	SHL1 (short life)	O.I.	H.G.	S.X.	Please select
0.17	21.2	Gma.8366.1.S1_a_at	At1g53400	-	-	2e-12	At3g17850	protein kinase, putative	O.I.	H.G.	S.X.	Please select
0.10	13.0	Gma.6608.1.S1_at	At1g53400	-	-	1e-27	At4g33410	signal peptide peptidase family protein	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Vitis_vinifera

Zea_mays

Back to the CoP portal site

Back to the KAGIANA project homepage