Co-expression analysis

Gene ID Ta.18551.1.S1_at
Gene name
Homology with ArabidopsisSimilar to At5g44420: PDF1.2 (HF=3e+0)
Module size 6 genes
NF 0.47
%ile 72.5

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.9198.20.96Ta.18551.1.S1_atCA648991--3e+0At5g44420PDF1.2O.I.H.G.S.X.
0.5072.40.97Ta.16983.2.S1_atCA642112--1e+0At5g60680unknown proteinO.I.H.G.S.X.
0.4666.80.97Ta.16953.1.A1_x_atCA606140--1e+0At2g02850ARPN (PLANTACYANIN)O.I.H.G.S.X.
0.4058.40.97TaAffx.9025.1.S1_atCA615839--5e-5At1g60730aldo/keto reductase family proteinO.I.H.G.S.X.
0.3549.80.96TaAffx.31813.1.S1_x_atCA607079--6e+0At3g49570LSU3 (RESPONSE TO LOW SULFUR 3)O.I.H.G.S.X.
0.3142.70.97Ta.19183.2.S1_atCA647961--3e+1At5g21920YGGT family proteinO.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
111.9100.0GSM314261tissue type: seedling, root - rep2GSE12508Transcription patterns during wheat developmentLink to GEO
97.5100.0GSM314262tissue type: seedling, root - rep3GSE12508Transcription patterns during wheat developmentLink to GEO
21.199.7GSM314260tissue type: seedling, root - rep1GSE12508Transcription patterns during wheat developmentLink to GEO
5.597.8GSM314256tissue type: germinating seed, root - rep3GSE12508Transcription patterns during wheat developmentLink to GEO
3.495.2GSM298092Crown tissue of Solstice at 3 weeks post germinationGSE11774Expression data from cold treated wheat cultivarsLink to GEO
2.391.5GSM314254tissue type: germinating seed, root - rep1GSE12508Transcription patterns during wheat developmentLink to GEO
2.291.0GSM314255tissue type: germinating seed, root - rep2GSE12508Transcription patterns during wheat developmentLink to GEO
1.787.1GSM250900TcLr34_3dpi_inoculated_rep3GSE9915Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheatLink to GEO
1.483.5GSM298073Crown tissue of Paragon at 5 weeks post germination, biological rep 1GSE11774Expression data from cold treated wheat cultivarsLink to GEO
1.483.5GSM250898TcLr1_3dpi_inoculated_rep3GSE9915Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheatLink to GEO

Inter-species module comparison

A co-expression module including the maize gene, Zm.7336.1.A1_at, orthologous to the query gene, Ta.18551.1.S1_at

VF%ileGene IDRepr. IDGene NameFunc.EvAGI codeArabidopsis gene nameO.I.H.G.S.X.Other DB
0.9499.5Zm.7336.1.A1_atAt5g44420hypothetical protein LOC100279133 /// 50kD gamma zein-2e-3At1g30460CPSF30O.I.H.G.S.X.
0.4251.3Zm.4984.1.S1_atAt5g44420diacylglycerol kinase-2e-11At4g30340ATDGK7 (Diacylglycerol kinase 7)O.I.H.G.S.X.
0.4251.3Zm.6977.2.A1_atAt5g44420hypothetical protein LOC100192796 /// hypothetical protein LOC100276045 /// hypothetical protein LOC100277812 /// hypothetical protein LOC100278532-4e-19At3g48560CSR1 (CHLORSULFURON/IMIDAZOLINONE RESISTANT 1)O.I.H.G.S.X.
0.3945.6Zm.5690.1.A1_atAt5g44420--2e+0At4g09970unknown proteinO.I.H.G.S.X.
0.3844.2Zm.17751.1.S1_atAt5g44420--1e+0At1g14210ribonuclease T2 family proteinO.I.H.G.S.X.
0.3641.3Zm.18408.1.A1_atAt5g44420--2e-5At3g07940zinc finger and C2 domain protein, putativeO.I.H.G.S.X.
0.3641.3Zm.2680.1.A1_atAt5g44420hypothetical protein LOC100193801-4e+0At4g05497F-box family proteinO.I.H.G.S.X.
0.3538.9Zm.18544.1.A1_atAt5g44420--1e-1At4g24900unknown proteinO.I.H.G.S.X.
0.3538.9Zm.15722.1.A1_a_atAt5g44420hypothetical protein LOC100273877-8e-3At3g03180Got1-like family proteinO.I.H.G.S.X.
0.3336.0Zm.17547.1.S1_atAt5g44420fibroin heavy chain-1e-1At3g05920heavy-metal-associated domain-containing proteinO.I.H.G.S.X.
0.3131.6Zm.19161.1.A1_atAt5g44420--2e-7At1g14650SWAP (Suppressor-of-White-APricot)/surp domain-containing protein / ubiquitin family proteinO.I.H.G.S.X.
0.2928.1Zm.4703.1.A1_atAt5g44420hypothetical protein LOC100279234-2e+1At5g41860unknown proteinO.I.H.G.S.X.
0.2928.1Zm.4049.1.A1_atAt5g44420hypothetical protein LOC100279705-1e+0At5g14130peroxidase, putativeO.I.H.G.S.X.
0.2828.1Zm.274.2.S1_atAt5g44420--6e-14At1g80950phospholipid/glycerol acyltransferase family proteinO.I.H.G.S.X.
0.2828.1Zm.5233.1.A1_atAt5g44420acylamino-acid-releasing enzyme-2e-4At4g14570acylaminoacyl-peptidase-relatedO.I.H.G.S.X.
0.2828.1Zm.6243.1.S1_atAt5g44420--7e-2At5g22460esterase/lipase/thioesterase family proteinO.I.H.G.S.X.
0.2724.6Zm.16004.2.A1_atAt5g44420hypothetical protein LOC100274208-1e-23At2g45240MAP1A (METHIONINE AMINOPEPTIDASE 1A)O.I.H.G.S.X.
0.2724.6Zm.7364.1.A1_atAt5g44420--2e+0At5g25750unknown proteinO.I.H.G.S.X.
0.2724.6Zm.14043.2.S1_atAt5g44420Hypothetical protein LOC100191223-2e-1At5g46860VAM3O.I.H.G.S.X.
0.2521.3Zm.4986.2.S1_atAt5g44420UDP-glucose 6-dehydrogenase-9e-63At5g15490UDP-glucose 6-dehydrogenase, putativeO.I.H.G.S.X.
0.2216.9Zm.1263.1.A1_atAt5g44420hypothetical protein LOC100274372-1e-7At3g51820G4O.I.H.G.S.X.
0.2115.5Zm.13070.1.A1_atAt5g44420protein recA-2e-37At1g79050DNA repair protein recAO.I.H.G.S.X.
0.2014.2Zm.17247.1.A1_atAt5g44420--5e-29At5g63400ADK1 (ADENYLATE KINASE 1)O.I.H.G.S.X.
0.2014.2Zm.19193.1.A1_atAt5g44420hypothetical protein LOC100279551-4e-4At5g53180PTB2 (POLYPYRIMIDINE TRACT-BINDING PROTEIN 2)O.I.H.G.S.X.
0.2014.2Zm.17499.1.A1_atAt5g44420hypothetical protein LOC100279269-3e-1At2g03230-O.I.H.G.S.X.
0.2014.2Zm.4361.1.A1_atAt5g44420hypothetical protein LOC100192530-2e+0At1g16320unknown proteinO.I.H.G.S.X.
0.1912.8Zm.12887.2.S1_atAt5g44420--8e-1At1g70270ATP binding / DNA bindingO.I.H.G.S.X.
0.1811.6ZmAffx.571.1.A1_atAt5g44420hypothetical protein LOC100191288-3e+0At5g20230ATBCB (ARABIDOPSIS BLUE-COPPER-BINDING PROTEIN)O.I.H.G.S.X.
0.1710.6Zm.16484.1.A1_atAt5g44420hypothetical protein LOC100274503-1e-5At3g13230RNA bindingO.I.H.G.S.X.
0.169.4Zm.2953.1.S1_atAt5g44420hypothetical protein LOC100276099-3e-6At5g13500unknown proteinO.I.H.G.S.X.
0.169.4Zm.17240.1.A1_atAt5g44420hypothetical protein LOC100276245-5e+0At5g66040STR16 (SULFURTRANSFERASE PROTEIN 16)O.I.H.G.S.X.
0.147.7Zm.14128.1.A1_atAt5g44420ZF-HD protein dimerisation region containing protein-3e-2At1g69600ZFHD1 (ZINC FINGER HOMEODOMAIN 1)O.I.H.G.S.X.
0.147.7Zm.13856.1.S1_atAt5g44420formate tetrahyrofolate ligase-9e-58At1g50480THFS (10-FORMYLTETRAHYDROFOLATE SYNTHETASE)O.I.H.G.S.X.
0.147.7Zm.2220.3.S1_atAt5g44420hypothetical protein LOC100273713-9e-4At3g55450protein kinase, putativeO.I.H.G.S.X.
0.147.7Zm.17955.2.A1_a_atAt5g44420--5e+0At4g32530vacuolar ATP synthase, putative / V-ATPase, putativeO.I.H.G.S.X.
0.125.9ZmAffx.1064.1.A1_atAt5g44420--8e-1At5g44450methyltransferaseO.I.H.G.S.X.
0.125.9Zm.5608.1.S1_a_atAt5g44420--8e+0At4g17650aromatic-rich family proteinO.I.H.G.S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Vitis_vinifera



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