Co-expression analysis

Gene ID Ta.18551.1.S1_at
Gene name
Homology with ArabidopsisSimilar to At5g44420: PDF1.2 (HF=3e+0)
Module size 6 genes
NF 0.47
%ile 72.5

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.9198.20.96Ta.18551.1.S1_atCA648991--3e+0At5g44420PDF1.2O.I.H.G.S.X.
0.5072.40.97Ta.16983.2.S1_atCA642112--1e+0At5g60680unknown proteinO.I.H.G.S.X.
0.4666.80.97Ta.16953.1.A1_x_atCA606140--1e+0At2g02850ARPN (PLANTACYANIN)O.I.H.G.S.X.
0.4058.40.97TaAffx.9025.1.S1_atCA615839--5e-5At1g60730aldo/keto reductase family proteinO.I.H.G.S.X.
0.3549.80.96TaAffx.31813.1.S1_x_atCA607079--6e+0At3g49570LSU3 (RESPONSE TO LOW SULFUR 3)O.I.H.G.S.X.
0.3142.70.97Ta.19183.2.S1_atCA647961--3e+1At5g21920YGGT family proteinO.I.H.G.S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
111.9100.0GSM314261tissue type: seedling, root - rep2GSE12508Transcription patterns during wheat developmentLink to GEO
97.5100.0GSM314262tissue type: seedling, root - rep3GSE12508Transcription patterns during wheat developmentLink to GEO
21.199.7GSM314260tissue type: seedling, root - rep1GSE12508Transcription patterns during wheat developmentLink to GEO
5.597.8GSM314256tissue type: germinating seed, root - rep3GSE12508Transcription patterns during wheat developmentLink to GEO
3.495.2GSM298092Crown tissue of Solstice at 3 weeks post germinationGSE11774Expression data from cold treated wheat cultivarsLink to GEO
2.391.5GSM314254tissue type: germinating seed, root - rep1GSE12508Transcription patterns during wheat developmentLink to GEO
2.291.0GSM314255tissue type: germinating seed, root - rep2GSE12508Transcription patterns during wheat developmentLink to GEO
1.787.1GSM250900TcLr34_3dpi_inoculated_rep3GSE9915Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheatLink to GEO
1.483.5GSM298073Crown tissue of Paragon at 5 weeks post germination, biological rep 1GSE11774Expression data from cold treated wheat cultivarsLink to GEO
1.483.5GSM250898TcLr1_3dpi_inoculated_rep3GSE9915Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheatLink to GEO

Inter-species module comparison

A co-expression module including the soybean gene, GmaAffx.58761.1.S1_at, orthologous to the query gene, Ta.18551.1.S1_at

VF%ileGene IDRepr. IDGene NameFunc.EvAGI codeArabidopsis gene nameO.I.H.G.S.X.Other DB
0.9198.6GmaAffx.58761.1.S1_atAt5g44420--8e-1At4g27790calcium-binding EF hand family proteinO.I.H.G.S.X.
0.3548.6GmaAffx.90667.1.A1_atAt5g44420--1e+1At5g45350proline-rich family proteinO.I.H.G.S.X.
0.3346.1Gma.3929.1.A1_atAt5g44420--4e-10At5g18400unknown proteinO.I.H.G.S.X.
0.3243.7Gma.4013.1.S1_atAt5g44420plamsma membrane-associated AAA-ATPase-0At5g03340cell division cycle protein 48, putative / CDC48, putativeO.I.H.G.S.X.
0.2839.0Gma.16448.1.A1_atAt5g44420--6e-6At5g58470TAF15b (TBP-ASSOCIATED FACTOR 15b)O.I.H.G.S.X.
0.2839.0Gma.4379.3.A1_a_atAt5g44420--8e-14At4g11150TUF (VACUOLAR ATP SYNTHASE SUBUNIT E1)O.I.H.G.S.X.
0.2735.7Gma.8114.1.S1_atAt5g44420--4e-45At4g19210ATRLI2O.I.H.G.S.X.
0.2735.7Gma.3462.1.S1_atAt5g44420--2e+0At3g43740leucine-rich repeat family proteinO.I.H.G.S.X.
0.2430.9Gma.2609.2.A1_atAt5g44420--3e-9At5g11170ATP binding / ATP-dependent helicase/ helicase/ nucleic acid bindingO.I.H.G.S.X.
0.2126.6Gma.6228.1.S1_atAt5g44420--3e-123At1g53750RPT1A (REGULATORY PARTICLE TRIPLE-A 1A)O.I.H.G.S.X.
0.1721.2GmaAffx.7159.2.A1_atAt5g44420--3e+0At5g59845gibberellin-regulated family proteinO.I.H.G.S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Vitis_vinifera
Zea_mays



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