Co-expression analysis

Gene ID	Ta.1842.2.S1_at
Gene name
Homology with Arabidopsis	Similar to At1g11840: ATGLX1 (GLYOXALASE I HOMOLOG) (HF=5e-14)
Module size	16 genes
NF	0.29
%ile	48.0

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.83	93.4	0.98	Ta.1842.2.S1_at	BJ321503	-	-	5e-14	At1g11840	ATGLX1 (GLYOXALASE I HOMOLOG)	O.I.	H.G.	S.X.	Please select
0.47	67.9	0.98	Ta.2777.2.S1_a_at	BJ318404	small Ran-related GTP-binding protein	-	2e-118	At5g55190	RAN3 (RAN GTPASE 3)	O.I.	H.G.	S.X.	Please select
0.46	66.8	0.99	Ta.27713.2.A1_x_at	CD910422	Elongation factor-1 alpha	-	0	At1g07920	elongation factor 1-alpha / EF-1-alpha	O.I.	H.G.	S.X.	Please select
0.44	64.5	0.99	Ta.2739.3.S1_x_at	BJ298795	Ribosomal protein L19	-	5e-44	At3g16780	60S ribosomal protein L19 (RPL19B)	O.I.	H.G.	S.X.	Please select
0.36	51.9	0.99	Ta.22964.4.S1_at	BJ218310	-	-	2e-21	At3g06700	60S ribosomal protein L29 (RPL29A)	O.I.	H.G.	S.X.	Please select
0.33	46.9	0.98	Ta.27789.1.S1_x_at	CD920668	-	-	9e-35	At1g09640	elongation factor 1B-gamma, putative / eEF-1B gamma, putative	O.I.	H.G.	S.X.	Please select
0.31	42.7	0.99	Ta.24981.2.S1_a_at	BQ579730	40S ribosomal protein S9	-	1e-23	At5g39850	40S ribosomal protein S9 (RPS9C)	O.I.	H.G.	S.X.	Please select
0.28	39.2	0.99	Ta.18.1.S1_at	BJ241578	-	-	2e-113	At1g54270	EIF4A-2	O.I.	H.G.	S.X.	Please select
0.28	39.2	0.99	Ta.27713.1.A1_x_at	CD879558	elongation factor-1 alpha	-	0	At1g07920	elongation factor 1-alpha / EF-1-alpha	O.I.	H.G.	S.X.	Please select
0.28	39.2	0.99	Ta.794.1.S1_x_at	CK171366	QM	-	1e-57	At1g14320	SAC52 (SUPPRESSOR OF ACAULIS 52)	O.I.	H.G.	S.X.	Please select
0.24	30.3	0.99	Ta.27377.2.S1_x_at	BJ320612	-	-	2e-64	At3g52590	UBQ1 (UBIQUITIN EXTENSION PROTEIN 1)	O.I.	H.G.	S.X.	Please select
0.22	27.1	0.98	Ta.50.1.S1_at	BJ307738	TaWIN1 protein	-	1e-24	At3g02520	GRF7 (GENERAL REGULATORY FACTOR 7)	O.I.	H.G.	S.X.	Please select
0.21	25.5	0.98	Ta.2848.1.S1_at	BQ605815	-	-	1e-7	At5g64350	FKBP12 (FK506-BINDING PROTEIN)	O.I.	H.G.	S.X.	Please select
0.16	18.2	0.99	Ta.24128.2.S1_x_at	BE403805	-	-	1e-12	At2g21580	40S ribosomal protein S25 (RPS25B)	O.I.	H.G.	S.X.	Please select
0.16	18.2	0.98	Ta.2041.2.S1_a_at	CA606956	-	-	2e-6	At3g12760	-	O.I.	H.G.	S.X.	Please select
0.14	15.8	0.98	Ta.14415.1.S1_at	BJ310478	20S proteasome beta 7 subunit	-	4e-3	At1g56450	PBG1	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
14.8	99.5	GSM315203	target strand labeled: Antisense - rep1	GSE12528	Wheat "Chinese Spring" natural antisense transcription survey
8.5	98.9	GSM314287	tissue type: 22 DAP endosperm - rep1	GSE12508	Transcription patterns during wheat development
8.0	98.8	GSM314289	tissue type: 22 DAP endosperm - rep3	GSE12508	Transcription patterns during wheat development
7.7	98.7	GSM314288	tissue type: 22 DAP endosperm - rep2	GSE12508	Transcription patterns during wheat development
4.2	96.6	GSM139931	Anther maturea nthers rep1	GSE6027	Microarray expression analysis of meiosis and microsporogenesis in hexaploid bread wheat
4.2	96.6	GSM314278	tissue type: anthers, before anthesis - rep1	GSE12508	Transcription patterns during wheat development
4.1	96.4	GSM139933	Anther mature anthers rep3	GSE6027	Microarray expression analysis of meiosis and microsporogenesis in hexaploid bread wheat
4.1	96.4	GSM314280	tissue type: anthers, before anthesis - rep3	GSE12508	Transcription patterns during wheat development
4.0	96.3	GSM314279	tissue type: anthers, before anthesis - rep2	GSE12508	Transcription patterns during wheat development
3.9	96.1	GSM139932	Anther mature anthers rep2	GSE6027	Microarray expression analysis of meiosis and microsporogenesis in hexaploid bread wheat

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Vitis_vinifera

Zea_mays

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