Co-expression analysis

Gene ID	Ta.1834.2.A1_at
Gene name
Homology with Arabidopsis	Similar to At1g47420: - (HF=1e-3)
Module size	8 genes
NF	0.57
%ile	83.1

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.67	86.3	0.98	Ta.1834.2.A1_at	BQ161474	-	-	1e-3	At1g47420	-	O.I.	H.G.	S.X.	Please select
0.71	88.0	0.97	Ta.1017.1.S1_s_at	CA712586	-	-	1e+0	At5g27606	unknown protein	O.I.	H.G.	S.X.	Please select
0.71	88.0	0.98	Ta.1834.1.S1_x_at	CK198964	-	-	1e-2	At1g47420	-	O.I.	H.G.	S.X.	Please select
0.56	78.6	0.98	Ta.28742.5.S1_x_at	BJ276973	-	-	1e-47	At2g36530	LOS2	O.I.	H.G.	S.X.	Please select
0.50	72.4	0.98	TaAffx.9592.1.S1_at	CA594209	-	-	3e+1	At5g23650	myb family transcription factor	O.I.	H.G.	S.X.	Please select
0.48	69.0	0.98	Ta.5528.1.S1_at	CA601949	-	-	1e-48	At5g23250	succinyl-CoA ligase (GDP-forming) alpha-chain, mitochondrial, putative / succinyl-CoA synthetase, alpha chain, putative / SCS-alpha, putative	O.I.	H.G.	S.X.	Please select
0.47	67.9	0.98	Ta.28742.3.S1_x_at	BJ319513	-	-	6e-153	At2g36530	LOS2	O.I.	H.G.	S.X.	Please select
0.35	49.8	0.98	Ta.24979.1.S1_at	BT009114.1	-	-	7e-63	At5g03290	isocitrate dehydrogenase, putative / NAD+ isocitrate dehydrogenase, putative	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
6.3	98.2	GSM111241	genotype F82 developing seed at 5 days after anthesis, biological rep2	GSE4935	wheat expression level polymorphism study 39 genotypes 2 biological reps
5.5	97.8	GSM111208	genotype F36 developing seed at 5 days after anthesis, biological rep1	GSE4935	wheat expression level polymorphism study 39 genotypes 2 biological reps
4.2	96.6	GSM111205	genotype B10 developing seed at 5 days after anthesis, biological rep2	GSE4935	wheat expression level polymorphism study 39 genotypes 2 biological reps
3.7	95.8	GSM111185	genotype C22 developing seed at 5 days after anthesis, biological rep2	GSE4935	wheat expression level polymorphism study 39 genotypes 2 biological reps
3.7	95.8	GSM298092	Crown tissue of Solstice at 3 weeks post germination	GSE11774	Expression data from cold treated wheat cultivars
3.4	95.2	GSM314257	tissue type: germinating seed, embryo - rep1	GSE12508	Transcription patterns during wheat development
3.2	94.8	GSM314258	tissue type: germinating seed, embryo - rep2	GSE12508	Transcription patterns during wheat development
2.3	91.5	GSM111248	genotype F87 developing seed at 5 days after anthesis, biological rep1	GSE4935	wheat expression level polymorphism study 39 genotypes 2 biological reps
2.2	91.0	GSM111243	genotype C10 developing seed at 5 days after anthesis, biological rep2	GSE4935	wheat expression level polymorphism study 39 genotypes 2 biological reps
2.1	90.3	GSM314259	tissue type: germinating seed, embryo - rep3	GSE12508	Transcription patterns during wheat development

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Vitis_vinifera

Zea_mays

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