Co-expression analysis

Gene ID	Ta.18282.1.S1_x_at
Gene name
Homology with Arabidopsis	Similar to At5g28040: transcription regulator (HF=5e+0)
Module size	6 genes
NF	0.36
%ile	58.4

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.59	79.8	0.91	Ta.18282.1.S1_x_at	CA615952	-	-	5e+0	At5g28040	transcription regulator	O.I.	H.G.	S.X.	Please select
0.77	90.8	0.92	Ta.8226.1.S1_at	BE217050	18S subunit ribosomal protein	-	9e-3	At5g59790	unknown protein	O.I.	H.G.	S.X.	Please select
0.73	89.1	0.90	TaAffx.56625.1.S1_at	CA647545	-	-	7e-1	At1g24310	unknown protein	O.I.	H.G.	S.X.	Please select
0.40	58.4	0.93	Ta.5808.2.S1_a_at	CA601919	-	-	1e+0	At3g61890	ATHB-12 (ARABIDOPSIS THALIANA HOMEOBOX 12)	O.I.	H.G.	S.X.	Please select
0.38	54.7	0.92	TaAffx.83758.1.S1_s_at	CA651869	-	-	2e-8	At1g14000	VIK (VH1-INTERACTING KINASE)	O.I.	H.G.	S.X.	Please select
0.12	13.3	0.92	Ta.30049.1.S1_at	CA743705	-	-	1e-26	At1g14000	VIK (VH1-INTERACTING KINASE)	O.I.	H.G.	S.X.	Please select

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Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
6.3	98.2	GSM298067	Leaf tissue of Paragon at 5 weeks post germination, biological rep 1	GSE11774	Expression data from cold treated wheat cultivars
5.1	97.5	GSM111233	genotype H8 developing seed at 5 days after anthesis, biological rep2	GSE4935	wheat expression level polymorphism study 39 genotypes 2 biological reps
5.1	97.5	GSM298092	Crown tissue of Solstice at 3 weeks post germination	GSE11774	Expression data from cold treated wheat cultivars
5.0	97.4	GSM250900	TcLr34_3dpi_inoculated_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
4.8	97.2	GSM250898	TcLr1_3dpi_inoculated_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
4.5	96.9	GSM298054	Leaf tissue of Harnesk at 3 weeks post germination, biological rep 2	GSE11774	Expression data from cold treated wheat cultivars
4.4	96.8	GSM298070	Leaf tissue of Paragon at 9 weeks post germination, biological rep 2	GSE11774	Expression data from cold treated wheat cultivars
4.3	96.7	GSM250897	TcLr1_3dpi_mock_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
4.0	96.3	GSM343688	Wheat var. Kennedy_Fp inoculated_rep3	GSE13660	Gene expression analysis of the wheat response to infection by Fusarium pseudograminearum
3.9	96.1	GSM138149	genotype F29 developing seed at 5 days after anthesis, biological rep3	GSE5939	Wheat expression level polymorphism study 36 genotypes 2 biological reps from SB location

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Vitis_vinifera

Zea_mays

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