Co-expression analysis

Gene ID Ta.18282.1.S1_x_at
Gene name
Homology with ArabidopsisSimilar to At5g28040: transcription regulator (HF=5e+0)
Module size 6 genes
NF 0.36
%ile 58.4

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.5979.80.91Ta.18282.1.S1_x_atCA615952--5e+0At5g28040transcription regulatorO.I.H.G.S.X.
0.7790.80.92Ta.8226.1.S1_atBE21705018S subunit ribosomal protein-9e-3At5g59790unknown proteinO.I.H.G.S.X.
0.7389.10.90TaAffx.56625.1.S1_atCA647545--7e-1At1g24310unknown proteinO.I.H.G.S.X.
0.4058.40.93Ta.5808.2.S1_a_atCA601919--1e+0At3g61890ATHB-12 (ARABIDOPSIS THALIANA HOMEOBOX 12)O.I.H.G.S.X.
0.3854.70.92TaAffx.83758.1.S1_s_atCA651869--2e-8At1g14000VIK (VH1-INTERACTING KINASE)O.I.H.G.S.X.
0.1213.30.92Ta.30049.1.S1_atCA743705--1e-26At1g14000VIK (VH1-INTERACTING KINASE)O.I.H.G.S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
6.398.2GSM298067Leaf tissue of Paragon at 5 weeks post germination, biological rep 1GSE11774Expression data from cold treated wheat cultivarsLink to GEO
5.197.5GSM111233genotype H8 developing seed at 5 days after anthesis, biological rep2GSE4935wheat expression level polymorphism study 39 genotypes 2 biological repsLink to GEO
5.197.5GSM298092Crown tissue of Solstice at 3 weeks post germinationGSE11774Expression data from cold treated wheat cultivarsLink to GEO
5.097.4GSM250900TcLr34_3dpi_inoculated_rep3GSE9915Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheatLink to GEO
4.897.2GSM250898TcLr1_3dpi_inoculated_rep3GSE9915Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheatLink to GEO
4.596.9GSM298054Leaf tissue of Harnesk at 3 weeks post germination, biological rep 2GSE11774Expression data from cold treated wheat cultivarsLink to GEO
4.496.8GSM298070Leaf tissue of Paragon at 9 weeks post germination, biological rep 2GSE11774Expression data from cold treated wheat cultivarsLink to GEO
4.396.7GSM250897TcLr1_3dpi_mock_rep3GSE9915Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheatLink to GEO
4.096.3GSM343688Wheat var. Kennedy_Fp inoculated_rep3GSE13660Gene expression analysis of the wheat response to infection by Fusarium pseudograminearumLink to GEO
3.996.1GSM138149genotype F29 developing seed at 5 days after anthesis, biological rep3GSE5939Wheat expression level polymorphism study 36 genotypes 2 biological reps from SB locationLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Vitis_vinifera
Zea_mays



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