CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Ta.1816.1.S1_at

Gene name
Homology with Arabidopsis Similar to At5g06200: integral membrane family protein (HF=2e+0)

Module size 15 genes

NF 0.42

%ile 66.4

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.75 89.8 0.97 Ta.1816.1.S1_at AJ614274 - - 2e+0 At5g06200 integral membrane family protein O.I. H.G. S.X.
0.64 83.6 0.98 Ta.8547.1.S1_at M95747.1 initiation factor (iso)4f p82 subunit - 8e-15 At5g57870 eukaryotic translation initiation factor 4F, putative / eIF-4F, putative O.I. H.G. S.X.
0.52 73.7 0.98 Ta.2982.2.S1_x_at CK206222 - - 8e-29 At1g30580 GTP binding O.I. H.G. S.X.
0.52 73.7 0.98 Ta.4582.1.S1_at CK172043 - - 3e-23 At3g52140 tetratricopeptide repeat (TPR)-containing protein O.I. H.G. S.X.
0.49 69.7 0.98 Ta.2490.1.S1_at BJ250631 - - 4e-46 At3g59990 MAP2B (METHIONINE AMINOPEPTIDASE 2B) O.I. H.G. S.X.
0.44 64.5 0.97 Ta.2982.1.S1_x_at AY135021.1 GTP-binding protein - 3e-37 At1g30580 GTP binding O.I. H.G. S.X.
0.39 56.1 0.98 Ta.2776.1.S1_at AY059462.1 68 kDa protein HP68 - 7e-27 At4g19210 ATRLI2 O.I. H.G. S.X.
0.37 53.0 0.98 Ta.3075.1.A1_at CA497208 - - 8e-15 At3g04600 tRNA synthetase class I (W and Y) family protein O.I. H.G. S.X.
0.37 53.0 0.98 Ta.2706.3.S1_at CK205780 - - 2e-15 At1g79920 ATP binding O.I. H.G. S.X.
0.36 51.9 0.98 Ta.1529.1.S1_at CK153906 - - 5e-21 At4g39280 phenylalanyl-tRNA synthetase, putative / phenylalanine--tRNA ligase, putative O.I. H.G. S.X.
0.33 46.9 0.98 Ta.3078.2.S1_at CK156685 - - 1e+0 At2g18465 DNAJ heat shock N-terminal domain-containing protein O.I. H.G. S.X.
0.33 46.9 0.98 Ta.6942.1.A1_at CA615822 - - 2e-1 At2g46270 GBF3 (G-BOX BINDING FACTOR 3) O.I. H.G. S.X.
0.29 39.2 0.98 Ta.11627.1.S1_at CK194941 - - 8e-1 At1g49330 hydroxyproline-rich glycoprotein family protein O.I. H.G. S.X.
0.27 35.6 0.98 Ta.13761.1.S1_s_at AL820456 - - 2e+0 At2g25052 unknown protein O.I. H.G. S.X.
0.26 33.6 0.98 Ta.2835.2.S1_a_at CA502464 - - 3e-23 At1g14610 TWN2 (TWIN 2) O.I. H.G. S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
8.5 98.9 GSM315202 target strand labeled: Sense - rep1 GSE12528 Wheat "Chinese Spring" natural antisense transcription survey
5.8 97.9 GSM298057 Leaf tissue of Harnesk at 9 weeks post germination, biological rep 1 GSE11774 Expression data from cold treated wheat cultivars
4.9 97.3 GSM298067 Leaf tissue of Paragon at 5 weeks post germination, biological rep 1 GSE11774 Expression data from cold treated wheat cultivars
4.4 96.8 GSM298058 Leaf tissue of Harnesk at 9 weeks post germination, biological rep 2 GSE11774 Expression data from cold treated wheat cultivars
3.1 94.5 GSM298076 Crown tissue of Paragon at 9 weeks post germination, biological rep 2 GSE11774 Expression data from cold treated wheat cultivars
2.9 94.0 GSM298075 Crown tissue of Paragon at 9 weeks post germination, biological rep 1 GSE11774 Expression data from cold treated wheat cultivars
2.5 92.5 GSM298082 Leaf tissue of Solstice at 9 weeks post germination, biological rep 2 GSE11774 Expression data from cold treated wheat cultivars
2.4 92.0 GSM298094 Crown tissue of Solstice at 9 weeks post germination GSE11774 Expression data from cold treated wheat cultivars
2.0 89.7 GSM138169 genotype B68 developing seed at 5 days after anthesis, biological rep3 GSE5939 Wheat expression level polymorphism study 36 genotypes 2 biological reps from SB location
1.9 88.9 GSM314272 tissue type: floral bracts, before anthesis - rep1 GSE12508 Transcription patterns during wheat development

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Vitis_vinifera
Zea_mays

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