Co-expression analysis

Gene ID	Ta.18072.1.S1_at
Gene name
Homology with Arabidopsis	Similar to At1g79260: unknown protein (HF=2e+0)
Module size	6 genes
NF	0.53
%ile	79.6

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	98.2	0.96	Ta.18072.1.S1_at	CA628068	-	-	2e+0	At1g79260	unknown protein	O.I.	H.G.	S.X.	Please select
0.71	88.0	0.95	Ta.30811.1.S1_at	CN008292	-	-	1e-1	At1g70590	F-box family protein	O.I.	H.G.	S.X.	Please select
0.50	72.4	0.96	Ta.23276.1.A1_at	CK163786	-	-	2e+1	At5g62300	40S ribosomal protein S20 (RPS20C)	O.I.	H.G.	S.X.	Please select
0.44	64.5	0.96	Ta.25402.1.S1_at	CK160504	-	-	4e-42	At1g11430	plastid developmental protein DAG, putative	O.I.	H.G.	S.X.	Please select
0.42	60.9	0.95	Ta.12083.1.A1_at	CD885615	-	-	1e+0	At5g17470	calmodulin-related protein, putative	O.I.	H.G.	S.X.	Please select
0.29	39.2	0.96	TaAffx.93362.1.S1_at	BJ221573	-	-	2e-2	At3g43340	-	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
9.9	99.1	GSM250900	TcLr34_3dpi_inoculated_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
9.1	99.0	GSM250899	TcLr34_3dpi_mock_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
6.8	98.4	GSM250898	TcLr1_3dpi_inoculated_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
5.2	97.5	GSM250897	TcLr1_3dpi_mock_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
4.9	97.3	GSM298090	Leaf tissue of Solstice at 5 weeks post germination	GSE11774	Expression data from cold treated wheat cultivars
4.8	97.2	GSM298070	Leaf tissue of Paragon at 9 weeks post germination, biological rep 2	GSE11774	Expression data from cold treated wheat cultivars
4.7	97.1	GSM298092	Crown tissue of Solstice at 3 weeks post germination	GSE11774	Expression data from cold treated wheat cultivars
4.2	96.6	GSM250895	Tc_3dpi_mock_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
4.0	96.3	GSM250896	Tc_3dpi_inoculated_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
3.5	95.4	GSM324492	Si+ B- rep3	GSE12936	Transcriptomic analysis of the effect of silicon on wheat plants infected or uninfected with powdery mildew

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Vitis_vinifera

Zea_mays

Back to the CoP portal site

Back to the KAGIANA project homepage