Co-expression analysis

Gene ID Ta.18029.1.S1_at
Gene name
Homology with ArabidopsisSimilar to At5g52500: unknown protein (HF=4e+0)
Module size 7 genes
NF 0.32
%ile 52.2

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.5779.20.87Ta.18029.1.S1_atCA627440--4e+0At5g52500unknown proteinO.I.H.G.S.X.
0.3142.70.92TaAffx.94124.1.A1_atBG904216--3e+0At3g46080zinc finger (C2H2 type) family proteinO.I.H.G.S.X.
0.3040.90.92TaAffx.143995.11.A1_s_atAY645945floral homeotic protein-9e-7At5g60120TOE2O.I.H.G.S.X.
0.2939.20.88Ta.20284.1.S1_atCA677396--3e-1At5g39950ATTRX2 (THIOREDOXIN 2)O.I.H.G.S.X.
0.2939.20.89TaAffx.113871.2.S1_atCA660307--9e-1At2g28760NAD-dependent epimerase/dehydratase family proteinO.I.H.G.S.X.
0.2532.10.92Ta.1160.2.S1_x_atCA635399--1e+0Atmg00490-O.I.H.G.S.X.
0.2024.00.89TaAffx.53534.1.S1_atCA691448--4e+0At4g24974-O.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
30.899.9GSM324488Si- B+ rep2GSE12936Transcriptomic analysis of the effect of silicon on wheat plants infected or uninfected with powdery mildewLink to GEO
21.299.7GSM298067Leaf tissue of Paragon at 5 weeks post germination, biological rep 1GSE11774Expression data from cold treated wheat cultivarsLink to GEO
16.499.6GSM324487Si- B+ rep1GSE12936Transcriptomic analysis of the effect of silicon on wheat plants infected or uninfected with powdery mildewLink to GEO
8.898.9GSM298070Leaf tissue of Paragon at 9 weeks post germination, biological rep 2GSE11774Expression data from cold treated wheat cultivarsLink to GEO
5.797.9GSM298090Leaf tissue of Solstice at 5 weeks post germinationGSE11774Expression data from cold treated wheat cultivarsLink to GEO
4.096.3GSM250899TcLr34_3dpi_mock_rep3GSE9915Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheatLink to GEO
3.996.1GSM250898TcLr1_3dpi_inoculated_rep3GSE9915Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheatLink to GEO
3.896.0GSM250896Tc_3dpi_inoculated_rep3GSE9915Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheatLink to GEO
3.795.8GSM250895Tc_3dpi_mock_rep3GSE9915Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheatLink to GEO
3.595.4GSM298069Leaf tissue of Paragon at 9 weeks post germination, biological rep 1GSE11774Expression data from cold treated wheat cultivarsLink to GEO

Inter-species module comparison

A co-expression module including the soybean gene, PsAffx.C98000052_at, orthologous to the query gene, Ta.18029.1.S1_at

VF%ileGene IDRepr. IDGene NameFunc.EvAGI codeArabidopsis gene nameO.I.H.G.S.X.Other DB
0.9799.8PsAffx.C98000052_atAt5g52500--4e+0At1g62240unknown proteinO.I.H.G.S.X.
0.8592.8PsAffx.CL869Contig1_atAt5g52500--2e+0At3g06145unknown proteinO.I.H.G.S.X.
0.8492.6PsAffx.C95000068_s_atAt5g52500--4e-1At3g46870pentatricopeptide (PPR) repeat-containing proteinO.I.H.G.S.X.
0.7790.3PsAffx.CL2207Contig1_atAt5g52500--3e-1At2g33385arpc2b (actin-related protein C2B)O.I.H.G.S.X.
0.7689.7PsAffx.psHB020xH07f_atAt5g52500--9e+0At4g29590methyltransferaseO.I.H.G.S.X.
0.7589.5PsAffx.C144000009_atAt5g52500--3e+0At5g09390CD2-binding protein-relatedO.I.H.G.S.X.
0.7489.2PsAffx.CL2149Contig1_atAt5g52500--5e+0At5g06200integral membrane family proteinO.I.H.G.S.X.
0.7489.2GmaAffx.80926.1.S1_s_atAt5g52500--1e+1At3g02310SEP2 (SEPALLATA 2)O.I.H.G.S.X.
0.7388.9PsAffx.C180000014_atAt5g52500--9e-2At5g07600oleosin / glycine-rich proteinO.I.H.G.S.X.
0.7187.8PsAffx.CL2381Contig1_atAt5g52500--3e+0At3g13882structural constituent of ribosomeO.I.H.G.S.X.
0.7087.1PsAffx.C29000074_atAt5g52500--5e+0At5g35475-O.I.H.G.S.X.
0.6886.4PsAffx.CL728Contig1_atAt5g52500--1e+0At1g23205invertase/pectin methylesterase inhibitor family proteinO.I.H.G.S.X.
0.6786.1PsAffx.CL1344Contig1_atAt5g52500--1e+0At3g57450unknown proteinO.I.H.G.S.X.
0.6786.1PsAffx.C277000003_s_atAt5g52500--8e-2At3g15060AtRABA1g (Arabidopsis Rab GTPase homolog A1g)O.I.H.G.S.X.
0.6483.4PsAffx.C257000015_s_atAt5g52500--2e+0At4g01750RGXT2 (rhamnogalacturonan xylosyltransferase 2)O.I.H.G.S.X.
0.6382.9PsAffx.C55000025_s_atAt5g52500--5e-1At3g10400RNA recognition motif (RRM)-containing proteinO.I.H.G.S.X.
0.6181.8PsAffx.C173000014_atAt5g52500--3e-1At2g45800LIM domain-containing proteinO.I.H.G.S.X.
0.5778.8PsAffx.C97000022_atAt5g52500--6e+0At4g16500cysteine protease inhibitor family protein / cystatin family proteinO.I.H.G.S.X.
0.5778.8PsAffx.CL1226Contig1_atAt5g52500--2e+0At1g12440zinc finger (AN1-like) family proteinO.I.H.G.S.X.
0.5576.3PsAffx.CL716Contig1_atAt5g52500--2e+0At3g01020ISU2 (ISCU-LIKE 2)O.I.H.G.S.X.
0.5576.3PsAffx.CL1206Contig1_atAt5g52500--2e+0At5g49280hydroxyproline-rich glycoprotein family proteinO.I.H.G.S.X.
0.5474.8PsAffx.C103000011_atAt5g52500--4e+0At5g63905unknown proteinO.I.H.G.S.X.
0.5273.1PsAffx.CL994Contig1_atAt5g52500--5e+0At5g10050short-chain dehydrogenase/reductase (SDR) family proteinO.I.H.G.S.X.
0.4968.3PsAffx.CL1305Contig1_atAt5g52500--7e+0At3g63260ATMRK1O.I.H.G.S.X.
0.4867.7PsAffx.psZG004xK03f_s_atAt5g52500--7e-4At1g77710-O.I.H.G.S.X.
0.4665.5PsAffx.C190000012_atAt5g52500--7e+0At4g14740phosphoinositide bindingO.I.H.G.S.X.
0.4563.9PsAffx.C106000006_atAt5g52500--3e-1At1g77960unknown proteinO.I.H.G.S.X.
0.4463.3PsAffx.C144000026_atAt5g52500--1e-1At5g64400-O.I.H.G.S.X.
0.4158.1PsAffx.CL1416Contig1_atAt5g52500--1e-8At2g34250protein transport protein sec61, putativeO.I.H.G.S.X.
0.4057.1PsAffx.C120000029_atAt5g52500--1e+0At3g22410-O.I.H.G.S.X.
0.4057.1PsAffx.CL1426Contig1_atAt5g52500--8e-1At2g47540pollen Ole e 1 allergen and extensin family proteinO.I.H.G.S.X.
0.2329.9PsAffx.CL668Contig1_atAt5g52500--3e-1At5g47630mtACP3 (mitochondrial acyl carrier protein 3)O.I.H.G.S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Vitis_vinifera
Zea_mays



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