Co-expression analysis

Gene ID Ta.17648.1.S1_at
Gene name
Homology with ArabidopsisSimilar to At2g46700: calcium-dependent protein kinase, putative / CDPK, putative (HF=4e-20)
Module size 6 genes
NF 0.49
%ile 75.7

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.6786.30.96Ta.17648.1.S1_atCA623067--4e-20At2g46700calcium-dependent protein kinase, putative / CDPK, putativeO.I.H.G.S.X.
0.9198.20.95Ta.17648.1.S1_x_atCA623067--4e-20At2g46700calcium-dependent protein kinase, putative / CDPK, putativeO.I.H.G.S.X.
0.5576.80.94Ta.17648.1.S1_s_atCA623067--4e-20At2g46700calcium-dependent protein kinase, putative / CDPK, putativeO.I.H.G.S.X.
0.4058.40.96Ta.29541.2.S1_a_atCA641542--5e-12At5g53360seven in absentia (SINA) family proteinO.I.H.G.S.X.
0.4058.40.96Ta.28749.3.S1_a_atCA697673--9e-17At2g44610RAB6AO.I.H.G.S.X.
0.1719.80.96Ta.4954.3.S1_atCA713193--1e+1At5g18180Gar1 RNA-binding region family proteinO.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
7.298.5GSM314280tissue type: anthers, before anthesis - rep3GSE12508Transcription patterns during wheat developmentLink to GEO
6.798.4GSM314278tissue type: anthers, before anthesis - rep1GSE12508Transcription patterns during wheat developmentLink to GEO
5.697.8GSM314279tissue type: anthers, before anthesis - rep2GSE12508Transcription patterns during wheat developmentLink to GEO
5.397.6GSM298067Leaf tissue of Paragon at 5 weeks post germination, biological rep 1GSE11774Expression data from cold treated wheat cultivarsLink to GEO
3.194.5GSM138174genotype A81 developing seed at 5 days after anthesis, biological rep1GSE5939Wheat expression level polymorphism study 36 genotypes 2 biological reps from SB locationLink to GEO
2.793.3GSM250893TcLr34_3dpi_mock_rep2GSE9915Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheatLink to GEO
2.692.9GSM250900TcLr34_3dpi_inoculated_rep3GSE9915Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheatLink to GEO
2.692.9GSM250899TcLr34_3dpi_mock_rep3GSE9915Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheatLink to GEO
2.592.5GSM298054Leaf tissue of Harnesk at 3 weeks post germination, biological rep 2GSE11774Expression data from cold treated wheat cultivarsLink to GEO
2.492.0GSM143502Thatcher_Lr34 (resistant), rust inoculated basal leaf, replication 1GSE6227Expression data from rust or mock inoculated, fully expanded flag leaf halvesLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Vitis_vinifera
Zea_mays



Back to the CoP portal site

Back to the KAGIANA project homepage