Co-expression analysis

Gene ID Ta.17561.1.S1_at
Gene name
Homology with ArabidopsisSimilar to At3g16280: DNA binding / transcription factor (HF=7e-2)
Module size 21 genes
NF 0.13
%ile 26.2

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.8593.80.81Ta.17561.1.S1_atCA621831--7e-2At3g16280DNA binding / transcription factorO.I.H.G.S.X.
0.3346.90.88Ta.4255.3.S1_x_atCA619420--1e+0At4g11870unknown proteinO.I.H.G.S.X.
0.2939.20.93Ta.8976.2.A1_atBG904474--3e+0At1g02710glycine-rich proteinO.I.H.G.S.X.
0.2532.10.93TaAffx.121290.1.A1_atBG905481--6e+0At3g62030peptidyl-prolyl cis-trans isomerase, chloroplast / cyclophilin / rotamase / cyclosporin A-binding protein (ROC4)O.I.H.G.S.X.
0.2227.10.94TaAffx.97455.1.A1_atBQ169184--9e-1At1g07476unknown proteinO.I.H.G.S.X.
0.2024.00.86TaAffx.114085.1.S1_atCA599006--2e-11At1g01200ATRABA3 (ARABIDOPSIS RAB GTPASE HOMOLOG A3)O.I.H.G.S.X.
0.2024.00.92Ta.22587.2.S1_x_atCA630605--1e+0At3g46320histone H4O.I.H.G.S.X.
0.2024.00.92Ta.7900.1.A1_atBQ160883--3e+0At5g49500signal recognition particle 54 kDa protein 2 / SRP54 (SRP-54B)O.I.H.G.S.X.
0.1821.00.95Ta.488.3.S1_a_atCA627364--4e-3At4g09010APX4 (ASCORBATE PEROXIDASE 4)O.I.H.G.S.X.
0.1719.80.91Ta.7405.1.S1_a_atBJ269803--1e+0At2g32885-O.I.H.G.S.X.
0.1719.80.95Ta.28361.3.S1_x_atCA632972--3e-1At5g20100unknown proteinO.I.H.G.S.X.
0.1213.30.88TaAffx.52820.1.S1_atCA700528--2e-2At1g01200ATRABA3 (ARABIDOPSIS RAB GTPASE HOMOLOG A3)O.I.H.G.S.X.
0.0910.40.90Ta.20875.2.S1_x_atCA697196--4e+0At5g24105AGP41 (ARABINOGALACTAN-PROTEIN 41)O.I.H.G.S.X.
0.089.40.91Ta.4154.1.S1_atCD871920--1e+0At3g56290unknown proteinO.I.H.G.S.X.
0.089.40.94Ta.581.1.S1_atAY123417.1hypothetical LOC543355-1e-7At1g32470glycine cleavage system H protein, mitochondrial, putativeO.I.H.G.S.X.
0.089.40.92Ta.12691.1.A1_atBQ171800--2e+0At1g09840ATSK41 (SHAGGY-LIKE PROTEIN KINASE 41)O.I.H.G.S.X.
0.078.60.92TaAffx.79912.1.S1_atCA706162--3e+0At2g20820unknown proteinO.I.H.G.S.X.
0.078.60.91TaAffx.31743.1.S1_atCA608801--7e-1At1g77746unknown proteinO.I.H.G.S.X.
0.067.60.93Ta.3756.1.S1_x_atCA702961--3e-16At3g01480CYP38 (cyclophilin 38)O.I.H.G.S.X.
0.067.60.96Ta.28361.1.S1_x_atCA619696--8e-2At4g01150unknown proteinO.I.H.G.S.X.
0.045.80.90Ta.22988.1.S1_atCA692783--3e+0At1g70830MLP28 (MLP-LIKE PROTEIN 28)O.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
11.799.3GSM298067Leaf tissue of Paragon at 5 weeks post germination, biological rep 1GSE11774Expression data from cold treated wheat cultivarsLink to GEO
7.198.5GSM314284tissue type: 22 DAP embryo - rep1GSE12508Transcription patterns during wheat developmentLink to GEO
5.697.8GSM314286tissue type: 22 DAP embryo - rep3GSE12508Transcription patterns during wheat developmentLink to GEO
5.297.5GSM314285tissue type: 22 DAP embryo - rep2GSE12508Transcription patterns during wheat developmentLink to GEO
4.496.8GSM314252tissue type: germinating seed, coleoptile - rep2GSE12508Transcription patterns during wheat developmentLink to GEO
3.695.6GSM250900TcLr34_3dpi_inoculated_rep3GSE9915Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheatLink to GEO
3.695.6GSM314253tissue type: germinating seed, coleoptile - rep3GSE12508Transcription patterns during wheat developmentLink to GEO
3.695.6GSM343688Wheat var. Kennedy_Fp inoculated_rep3GSE13660Gene expression analysis of the wheat response to infection by Fusarium pseudograminearumLink to GEO
3.495.2GSM314251tissue type: germinating seed, coleoptile - rep1GSE12508Transcription patterns during wheat developmentLink to GEO
3.395.0GSM343687Wheat var. Kennedy_Fp inoculated_rep2GSE13660Gene expression analysis of the wheat response to infection by Fusarium pseudograminearumLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Vitis_vinifera
Zea_mays



Back to the CoP portal site

Back to the KAGIANA project homepage