Co-expression analysis

Gene ID	Ta.17400.1.S1_at
Gene name
Homology with Arabidopsis	Similar to At5g47455: unknown protein (HF=6e-1)
Module size	35 genes
NF	0.22
%ile	36.8

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	98.2	0.91	Ta.17400.1.S1_at	CA620487	-	-	6e-1	At5g47455	unknown protein	O.I.	H.G.	S.X.	Please select
0.43	62.2	0.95	TaAffx.67799.1.S1_at	BE516875	-	-	2e+1	At5g55460	protease inhibitor/seed storage/lipid transfer protein (LTP) family protein	O.I.	H.G.	S.X.	Please select
0.42	60.9	0.93	Ta.20440.1.S1_at	BQ238761	-	-	2e-2	At1g15290	binding	O.I.	H.G.	S.X.	Please select
0.40	58.4	0.95	TaAffx.82994.1.S1_at	CA653750	-	-	8e-5	At5g04710	aspartyl aminopeptidase, putative	O.I.	H.G.	S.X.	Please select
0.36	51.9	0.95	Ta.6901.1.S1_at	CK154963	-	-	4e-8	At2g47590	PHR2 (photolyase/blue-light receptor 2)	O.I.	H.G.	S.X.	Please select
0.35	49.8	0.95	Ta.1572.1.S1_a_at	CB307287	-	-	3e-18	At5g66120	3-dehydroquinate synthase, putative	O.I.	H.G.	S.X.	Please select
0.34	48.1	0.95	Ta.1964.1.S1_a_at	CD890475	-	-	2e+0	At3g13500	unknown protein	O.I.	H.G.	S.X.	Please select
0.34	48.1	0.93	TaAffx.129292.1.S1_at	CD935490	-	-	8e+0	At3g03272	-	O.I.	H.G.	S.X.	Please select
0.33	46.9	0.94	TaAffx.111902.1.S1_at	CA630792	-	-	2e-2	At5g38060	unknown protein	O.I.	H.G.	S.X.	Please select
0.30	40.9	0.95	Ta.3166.1.S1_at	CA609253	-	-	2e-2	At1g66430	pfkB-type carbohydrate kinase family protein	O.I.	H.G.	S.X.	Please select
0.29	39.2	0.95	Ta.4114.1.A1_x_at	CK170353	-	-	2e+0	At4g39360	unknown protein	O.I.	H.G.	S.X.	Please select
0.28	39.2	0.96	TaAffx.44794.1.S1_at	CK205555	-	-	7e-10	At4g16060	unknown protein	O.I.	H.G.	S.X.	Please select
0.27	35.6	0.96	Ta.23373.3.S1_x_at	BE413607	-	-	6e-19	At1g08110	lactoylglutathione lyase, putative / glyoxalase I, putative	O.I.	H.G.	S.X.	Please select
0.27	35.6	0.95	Ta.13731.1.S1_at	AY217753.1	-	-	6e-29	At5g13120	peptidyl-prolyl cis-trans isomerase cyclophilin-type family protein	O.I.	H.G.	S.X.	Please select
0.24	30.3	0.96	Ta.11132.1.S1_at	BQ169443	-	-	3e-9	At2g14750	APK (APS KINASE)	O.I.	H.G.	S.X.	Please select
0.22	27.1	0.95	Ta.28895.1.S1_s_at	AY217751.1	-	-	2e-19	At5g13120	peptidyl-prolyl cis-trans isomerase cyclophilin-type family protein	O.I.	H.G.	S.X.	Please select
0.21	25.5	0.97	Ta.1705.1.S1_x_at	CK205709	-	-	3e-84	At5g50920	CLPC1	O.I.	H.G.	S.X.	Please select
0.20	24.0	0.94	TaAffx.12963.1.A1_at	BJ215508	-	-	6e+0	At3g10490	anac052 (Arabidopsis NAC domain containing protein 52)	O.I.	H.G.	S.X.	Please select
0.20	24.0	0.96	Ta.46.1.S1_at	BJ266317	imidazoleglycerolphosphate dehydratase	-	2e-7	At3g22425	IGPD	O.I.	H.G.	S.X.	Please select
0.19	22.4	0.96	Ta.4806.1.S1_at	CK156511	-	-	1e-2	At1g58080	ATATP-PRT1 (ATP PHOSPHORIBOSYL TRANSFERASE 1)	O.I.	H.G.	S.X.	Please select
0.18	21.0	0.94	TaAffx.53992.1.S1_at	CA686992	-	-	3e+0	At3g32896	unknown protein	O.I.	H.G.	S.X.	Please select
0.16	18.2	0.95	Ta.28061.1.S1_x_at	CF133921	-	-	1e+1	At5g16650	DNAJ heat shock N-terminal domain-containing protein	O.I.	H.G.	S.X.	Please select
0.15	17.1	0.96	Ta.27680.1.S1_s_at	BQ162241	-	-	5e-1	At1g15825	hydroxyproline-rich glycoprotein family protein	O.I.	H.G.	S.X.	Please select
0.14	15.8	0.96	Ta.28410.1.S1_at	CA607784	-	-	1e+0	At5g10620	-	O.I.	H.G.	S.X.	Please select
0.13	14.6	0.96	TaAffx.97931.1.S1_at	BQ801647	-	-	4e-1	At1g07950	surfeit locus protein 5 family protein / SURF5 family protein	O.I.	H.G.	S.X.	Please select
0.13	14.6	0.95	TaAffx.39447.1.A1_at	BG905225	-	-	5e-2	At4g22640	-	O.I.	H.G.	S.X.	Please select
0.12	13.3	0.97	Ta.25681.1.S1_at	AJ614892	-	-	3e-2	At2g22145	-	O.I.	H.G.	S.X.	Please select
0.12	13.3	0.95	Ta.8006.2.S1_x_at	BJ308313	-	-	1e-4	At5g54680	ILR3 (iaa-leucine resistant3)	O.I.	H.G.	S.X.	Please select
0.12	13.3	0.95	Ta.3036.3.S1_x_at	CA656850	-	-	2e-1	At5g46020	unknown protein	O.I.	H.G.	S.X.	Please select
0.11	12.4	0.96	TaAffx.47794.1.A1_s_at	BG908062	-	-	5e-2	At5g38770	AtGDU7 (Arabidopsis thaliana GLUTAMINE DUMPER 7)	O.I.	H.G.	S.X.	Please select
0.10	11.3	0.96	Ta.16493.1.A1_s_at	CA607256	-	-	3e-1	At1g78410	VQ motif-containing protein	O.I.	H.G.	S.X.	Please select
0.09	10.4	0.97	Ta.10534.2.S1_x_at	CA599405	-	-	7e-1	At4g14570	acylaminoacyl-peptidase-related	O.I.	H.G.	S.X.	Please select
0.07	8.6	0.96	Ta.4930.1.S1_at	CK163197	-	-	9e-35	At4g13930	SHM4 (serine hydroxymethyltransferase 4)	O.I.	H.G.	S.X.	Please select
0.05	6.7	0.97	Ta.28553.13.S1_at	BJ300199	-	-	5e-138	At4g05320	UBQ10 (POLYUBIQUITIN 10)	O.I.	H.G.	S.X.	Please select
0.04	5.8	0.96	AFFX-Tae-r2-Bs-thr-5_s_at	AFFX-Tae-r2-Bs-thr-5	-	-			-	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
6.2	98.1	GSM324488	Si- B+ rep2	GSE12936	Transcriptomic analysis of the effect of silicon on wheat plants infected or uninfected with powdery mildew
3.6	95.6	GSM250898	TcLr1_3dpi_inoculated_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
3.0	94.3	GSM250895	Tc_3dpi_mock_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
2.9	94.0	GSM298092	Crown tissue of Solstice at 3 weeks post germination	GSE11774	Expression data from cold treated wheat cultivars
2.9	94.0	GSM324487	Si- B+ rep1	GSE12936	Transcriptomic analysis of the effect of silicon on wheat plants infected or uninfected with powdery mildew
2.8	93.6	GSM250900	TcLr34_3dpi_inoculated_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
2.7	93.3	GSM111233	genotype H8 developing seed at 5 days after anthesis, biological rep2	GSE4935	wheat expression level polymorphism study 39 genotypes 2 biological reps
2.6	92.9	GSM250896	Tc_3dpi_inoculated_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
2.4	92.0	GSM250897	TcLr1_3dpi_mock_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
2.4	92.0	GSM250899	TcLr34_3dpi_mock_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Vitis_vinifera

Zea_mays

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