Co-expression analysis

Gene ID	Ta.17220.1.S1_s_at
Gene name
Homology with Arabidopsis	Similar to At3g03070: NADH-ubiquinone oxidoreductase-related (HF=8e-5)
Module size	33 genes
NF	0.34
%ile	55.3

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.85	93.8	0.87	Ta.17220.1.S1_s_at	CA618887	-	-	8e-5	At3g03070	NADH-ubiquinone oxidoreductase-related	O.I.	H.G.	S.X.	Please select
0.53	74.9	0.90	TaAffx.108475.1.S1_at	CA687930	-	-	4e+0	At1g62981	unknown protein	O.I.	H.G.	S.X.	Please select
0.51	73.0	0.90	TaAffx.12644.1.S1_at	BJ247681	-	-	4e-1	At1g18800	NRP2 (NAP1-RELATED PROTEIN 2)	O.I.	H.G.	S.X.	Please select
0.44	64.5	0.93	TaAffx.64914.1.S1_at	BJ270115	-	-	4e+0	At1g51915	cryptdin protein-related	O.I.	H.G.	S.X.	Please select
0.43	62.2	0.92	TaAffx.110665.1.S1_at	CA656430	-	-	4e+0	At2g33250	unknown protein	O.I.	H.G.	S.X.	Please select
0.42	60.9	0.91	TaAffx.65627.1.S1_at	BJ235571	-	-	5e+0	At3g51380	IQD20 (IQ-domain 20)	O.I.	H.G.	S.X.	Please select
0.41	59.6	0.92	TaAffx.112556.1.S1_at	CA622998	-	-	4e+0	At1g67760	ATP binding / protein binding / unfolded protein binding	O.I.	H.G.	S.X.	Please select
0.39	56.1	0.93	TaAffx.105981.1.S1_at	CA727065	-	-	3e-1	At4g11870	unknown protein	O.I.	H.G.	S.X.	Please select
0.39	56.1	0.91	TaAffx.55497.1.S1_at	CA665286	-	-	3e-1	At5g62610	basic helix-loop-helix (bHLH) family protein	O.I.	H.G.	S.X.	Please select
0.37	53.0	0.91	TaAffx.38399.1.S1_at	BJ234422	-	-	1e+0	At3g61930	unknown protein	O.I.	H.G.	S.X.	Please select
0.35	49.8	0.91	Ta.5681.1.S1_x_at	CA605111	-	-	1e-4	At2g41420	proline-rich family protein	O.I.	H.G.	S.X.	Please select
0.34	48.1	0.92	TaAffx.128418.51.A1_at	BJ312178	-	-	1e+0	At1g31270	unknown protein	O.I.	H.G.	S.X.	Please select
0.34	48.1	0.91	TaAffx.79603.1.S1_at	CA712149	-	-	4e+0	At2g34010	unknown protein	O.I.	H.G.	S.X.	Please select
0.33	46.9	0.89	TaAffx.31195.1.S1_at	CA618611	-	-	8e-1	At1g21770	-	O.I.	H.G.	S.X.	Please select
0.33	46.9	0.93	TaAffx.50318.1.S1_at	CA742779	-	-	3e+0	At3g25400	-	O.I.	H.G.	S.X.	Please select
0.32	44.4	0.94	TaAffx.112440.1.S1_at	CA621396	-	-	4e-1	At3g11050	ATFER2 (ferritin 2)	O.I.	H.G.	S.X.	Please select
0.32	44.4	0.92	Ta.16453.1.S1_at	CA606648	-	-	1e+0	At4g29650	cytidine deaminase 4 (CDA4) (desH) / cytidine aminohydrolase	O.I.	H.G.	S.X.	Please select
0.31	42.7	0.92	TaAffx.59565.1.S1_at	CA598863	-	-	4e-3	At1g27620	transferase family protein	O.I.	H.G.	S.X.	Please select
0.31	42.7	0.94	TaAffx.105943.1.S1_at	CA727514	-	-	2e+1	At5g07470	PMSR3 (PEPTIDEMETHIONINE SULFOXIDE REDUCTASE 3)	O.I.	H.G.	S.X.	Please select
0.31	42.7	0.92	TaAffx.120617.1.S1_at	BJ212756	-	-	4e+0	At2g39470	PPL2 (PsbP-like protein 2)	O.I.	H.G.	S.X.	Please select
0.31	42.7	0.93	TaAffx.106823.1.S1_at	CA710938	-	-	4e+0	At5g55570	unknown protein	O.I.	H.G.	S.X.	Please select
0.31	42.7	0.93	TaAffx.30610.1.S1_at	CA623663	-	-	1e+1	At5g60890	MYB34 (MYB DOMAIN PROTEIN 34)	O.I.	H.G.	S.X.	Please select
0.30	40.9	0.91	TaAffx.13785.2.S1_at	CA708591	-	-	7e-8	At2g34690	ACD11 (ACCELERATED CELL DEATH 11)	O.I.	H.G.	S.X.	Please select
0.29	39.2	0.93	TaAffx.59475.1.S1_at	CA599957	-	-	3e-1	At4g25890	60S acidic ribosomal protein P3 (RPP3A)	O.I.	H.G.	S.X.	Please select
0.28	39.2	0.92	TaAffx.21728.1.A1_at	CA619942	-	-	7e-8	At4g34270	TIP41-like family protein	O.I.	H.G.	S.X.	Please select
0.27	35.6	0.92	Ta.26942.1.S1_at	CD491274	-	-	8e-46	At5g59300	UBC7 (UBIQUITIN CARRIER PROTEIN 7)	O.I.	H.G.	S.X.	Please select
0.26	33.6	0.90	TaAffx.84867.1.S1_at	CA627783	-	-	4e+0	At3g43970	unknown protein	O.I.	H.G.	S.X.	Please select
0.25	32.1	0.94	TaAffx.106823.1.S1_x_at	CA710938	-	-	4e+0	At5g55570	unknown protein	O.I.	H.G.	S.X.	Please select
0.25	32.1	0.92	Ta.3083.2.A1_at	BJ254365	-	-	4e+0	At3g05602	unknown protein	O.I.	H.G.	S.X.	Please select
0.24	30.3	0.94	TaAffx.25411.1.S1_at	CA700489	-	-	4e+0	At4g35320	unknown protein	O.I.	H.G.	S.X.	Please select
0.22	27.1	0.93	Ta.16574.1.S1_at	CA608765	-	-	4e+0	At5g49015	Expressed protein	O.I.	H.G.	S.X.	Please select
0.22	27.1	0.94	Ta.14479.3.S1_x_at	CA630294	-	-	7e-18	At2g05830	eukaryotic translation initiation factor 2B family protein / eIF-2B family protein	O.I.	H.G.	S.X.	Please select
0.18	21.0	0.93	TaAffx.38268.1.A1_at	BJ242361	-	-	1e+0	At1g21326	VQ motif-containing protein	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
7.8	98.7	GSM298070	Leaf tissue of Paragon at 9 weeks post germination, biological rep 2	GSE11774	Expression data from cold treated wheat cultivars
6.5	98.3	GSM298092	Crown tissue of Solstice at 3 weeks post germination	GSE11774	Expression data from cold treated wheat cultivars
5.4	97.7	GSM250900	TcLr34_3dpi_inoculated_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
5.3	97.6	GSM298067	Leaf tissue of Paragon at 5 weeks post germination, biological rep 1	GSE11774	Expression data from cold treated wheat cultivars
4.9	97.3	GSM250898	TcLr1_3dpi_inoculated_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
4.9	97.3	GSM314261	tissue type: seedling, root - rep2	GSE12508	Transcription patterns during wheat development
4.2	96.6	GSM250899	TcLr34_3dpi_mock_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
4.1	96.4	GSM250895	Tc_3dpi_mock_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
3.8	96.0	GSM250896	Tc_3dpi_inoculated_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
3.7	95.8	GSM314262	tissue type: seedling, root - rep3	GSE12508	Transcription patterns during wheat development

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Vitis_vinifera

Zea_mays

Back to the CoP portal site

Back to the KAGIANA project homepage