Co-expression analysis

Gene ID	Ta.17050.1.S1_a_at
Gene name
Homology with Arabidopsis	Similar to At3g61870: unknown protein (HF=9e-7)
Module size	6 genes
NF	0.34
%ile	55.9

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.56	78.6	0.94	Ta.17050.1.S1_a_at	CA721584	-	-	9e-7	At3g61870	unknown protein	O.I.	H.G.	S.X.	Please select
0.67	86.3	0.97	Ta.28670.1.S1_x_at	CA625828	-	-	4e-33	At3g63410	APG1 (ALBINO OR PALE GREEN MUTANT 1)	O.I.	H.G.	S.X.	Please select
0.67	86.3	0.97	Ta.12695.1.S1_at	CD373734	-	-	8e-3	At5g54170	-	O.I.	H.G.	S.X.	Please select
0.55	76.8	0.96	Ta.28670.1.S1_at	CA625828	-	-	4e-33	At3g63410	APG1 (ALBINO OR PALE GREEN MUTANT 1)	O.I.	H.G.	S.X.	Please select
0.30	40.9	0.97	Ta.27728.1.S1_at	AF314182.2	triose phosphate translocator	-	3e-22	At5g46110	APE2 (ACCLIMATION OF PHOTOSYNTHESIS TO ENVIRONMENT 2)	O.I.	H.G.	S.X.	Please select
0.11	12.4	0.95	Ta.23411.1.S1_at	BJ272562	-	-	3e-57	At3g60750	transketolase, putative	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
24.0	99.8	GSM315203	target strand labeled: Antisense - rep1	GSE12528	Wheat "Chinese Spring" natural antisense transcription survey
20.3	99.7	GSM139928	Anther immature pollen rep1	GSE6027	Microarray expression analysis of meiosis and microsporogenesis in hexaploid bread wheat
9.6	99.1	GSM250900	TcLr34_3dpi_inoculated_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
8.9	99.0	GSM139926	Anther tetrads rep2	GSE6027	Microarray expression analysis of meiosis and microsporogenesis in hexaploid bread wheat
7.4	98.6	GSM139930	Anther immature pollen rep3	GSE6027	Microarray expression analysis of meiosis and microsporogenesis in hexaploid bread wheat
7.2	98.5	GSM250898	TcLr1_3dpi_inoculated_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
5.4	97.7	GSM343688	Wheat var. Kennedy_Fp inoculated_rep3	GSE13660	Gene expression analysis of the wheat response to infection by Fusarium pseudograminearum
4.8	97.2	GSM250896	Tc_3dpi_inoculated_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
4.7	97.1	GSM343682	Wheat var. Kennedy_control_rep2	GSE13660	Gene expression analysis of the wheat response to infection by Fusarium pseudograminearum
4.4	96.8	GSM343685	Wheat var. Kennedy_control_rep3	GSE13660	Gene expression analysis of the wheat response to infection by Fusarium pseudograminearum

Inter-species module comparison

A co-expression module including the maize gene, ZmAffx.641.1.A1_at, orthologous to the query gene, Ta.17050.1.S1_a_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.82	94.6	ZmAffx.641.1.A1_at	At3g61870	-	-	3e+0	Atmg01350	-	O.I.	H.G.	S.X.	Please select
0.80	94.0	Zm.16959.1.S1_at	At3g61870	hypothetical protein LOC100192872	-	1e-55	At1g57720	elongation factor 1B-gamma, putative / eEF-1B gamma, putative	O.I.	H.G.	S.X.	Please select
0.75	90.8	ZmAffx.1332.1.S1_s_at	At3g61870	-	-	1e+0	At3g24465	-	O.I.	H.G.	S.X.	Please select
0.75	90.8	ZmAffx.83.1.A1_at	At3g61870	hypothetical protein LOC100277826	-	8e-1	At5g06290	2-Cys Prx B (2-Cysteine peroxiredoxin B)	O.I.	H.G.	S.X.	Please select
0.71	88.2	ZmAffx.200.1.S1_at	At3g61870	-	-	8e-1	At4g36500	unknown protein	O.I.	H.G.	S.X.	Please select
0.61	79.5	ZmAffx.200.1.A1_at	At3g61870	-	-	8e-1	At4g36500	unknown protein	O.I.	H.G.	S.X.	Please select
0.57	75.1	ZmAffx.740.1.S1_at	At3g61870	Hypothetical protein LOC100192706	-	3e+0	At3g53630	unknown protein	O.I.	H.G.	S.X.	Please select
0.52	67.3	ZmAffx.162.1.A1_at	At3g61870	Hypothetical protein LOC100193115	-	2e-1	At2g27240	unknown protein	O.I.	H.G.	S.X.	Please select
0.50	65.7	ZmAffx.939.1.S1_at	At3g61870	-	-	9e-16	At5g15400	U-box domain-containing protein	O.I.	H.G.	S.X.	Please select
0.35	38.9	Zm.1079.5.A1_a_at	At3g61870	-	-	6e-3	At1g23730	BCA3 (BETA CARBONIC ANHYDRASE 4)	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Vitis_vinifera

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