CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Ta.17050.1.S1_a_at

Gene name
Homology with Arabidopsis Similar to At3g61870: unknown protein (HF=9e-7)

Module size 6 genes

NF 0.34

%ile 55.9

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.56 78.6 0.94 Ta.17050.1.S1_a_at CA721584 - - 9e-7 At3g61870 unknown protein O.I. H.G. S.X.
0.67 86.3 0.97 Ta.28670.1.S1_x_at CA625828 - - 4e-33 At3g63410 APG1 (ALBINO OR PALE GREEN MUTANT 1) O.I. H.G. S.X.
0.67 86.3 0.97 Ta.12695.1.S1_at CD373734 - - 8e-3 At5g54170 - O.I. H.G. S.X.
0.55 76.8 0.96 Ta.28670.1.S1_at CA625828 - - 4e-33 At3g63410 APG1 (ALBINO OR PALE GREEN MUTANT 1) O.I. H.G. S.X.
0.30 40.9 0.97 Ta.27728.1.S1_at AF314182.2 triose phosphate translocator - 3e-22 At5g46110 APE2 (ACCLIMATION OF PHOTOSYNTHESIS TO ENVIRONMENT 2) O.I. H.G. S.X.
0.11 12.4 0.95 Ta.23411.1.S1_at BJ272562 - - 3e-57 At3g60750 transketolase, putative O.I. H.G. S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
24.0 99.8 GSM315203 target strand labeled: Antisense - rep1 GSE12528 Wheat "Chinese Spring" natural antisense transcription survey
20.3 99.7 GSM139928 Anther immature pollen rep1 GSE6027 Microarray expression analysis of meiosis and microsporogenesis in hexaploid bread wheat
9.6 99.1 GSM250900 TcLr34_3dpi_inoculated_rep3 GSE9915 Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
8.9 99.0 GSM139926 Anther tetrads rep2 GSE6027 Microarray expression analysis of meiosis and microsporogenesis in hexaploid bread wheat
7.4 98.6 GSM139930 Anther immature pollen rep3 GSE6027 Microarray expression analysis of meiosis and microsporogenesis in hexaploid bread wheat
7.2 98.5 GSM250898 TcLr1_3dpi_inoculated_rep3 GSE9915 Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
5.4 97.7 GSM343688 Wheat var. Kennedy_Fp inoculated_rep3 GSE13660 Gene expression analysis of the wheat response to infection by Fusarium pseudograminearum
4.8 97.2 GSM250896 Tc_3dpi_inoculated_rep3 GSE9915 Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
4.7 97.1 GSM343682 Wheat var. Kennedy_control_rep2 GSE13660 Gene expression analysis of the wheat response to infection by Fusarium pseudograminearum
4.4 96.8 GSM343685 Wheat var. Kennedy_control_rep3 GSE13660 Gene expression analysis of the wheat response to infection by Fusarium pseudograminearum

Inter-species module comparison

A co-expression module including the Arabidopsis gene, At3g61870, orthologous to the query gene, Ta.17050.1.S1_a_at

VF %ile Gene ID Repr. ID Gene Name Func. O.I. H.G. S.X. Other DB
0.33 38.1 At3g61870 825360 unknown protein F:molecular_function unknown;P:biological_process unknown;C:chloroplast, chloroplast inner membrane, chloroplast envelope;BOP O.I. H.G. S.X.
0.74 86.1 At3g63140 825489 CSP41A (CHLOROPLAST STEM-LOOP BINDING PROTEIN OF 41 KDA) Encodes a protein with ribonuclease activity that is involved in plastid rRNA maturation. O.I. H.G. S.X.
0.67 81.6 At1g11860 837733 aminomethyltransferase, putative F:aminomethyltransferase activity;P:response to cadmium ion;C:in 6 components;OBMFAP O.I. H.G. S.X.
0.67 81.6 At5g36700 833635 PGLP1 (2-PHOSPHOGLYCOLATE PHOSPHATASE 1) F:phosphoglycolate phosphatase activity;P:metabolic process;C:chloroplast stroma, chloroplast;BOMFAP O.I. H.G. S.X.
0.64 78.9 At1g32080 840100 membrane protein, putative F:unknown;P:unknown;C:chloroplast, chloroplast inner membrane, membrane, chloroplast envelope;BOFPA O.I. H.G. S.X.
0.64 78.9 At3g55800 824746 SBPASE (sedoheptulose-bisphosphatase) Encodes the chloroplast enzyme sedoheptulose-1,7-bisphosphatase (SBPase), involved in the carbon reduction of the Calvin cycle. Increase in SBPase activity in transgenic lines accumulate up to 50% more sucrose and starch than wild-type. O.I. H.G. S.X.
0.63 78.1 At3g54050 824572 fructose-1,6-bisphosphatase, putative / D-fructose-1,6-bisphosphate 1-phosphohydrolase, putative / FBPase, putative F:fructose 1,6-bisphosphate 1-phosphatase activity, phosphoric ester hydrolase activity;P:response to cold, fructose metabolic process;C:apoplast, stromule, chloroplast stroma, chloroplast;BOMPFA O.I. H.G. S.X.
0.44 57.2 At3g01480 821137 CYP38 (cyclophilin 38) Encodes a chloroplast cyclophilin functioning in the assembly and maintenance of photosystem II (PSII) supercomplexes. O.I. H.G. S.X.
0.44 57.2 At1g32060 840098 PRK (PHOSPHORIBULOKINASE) F:protein binding, phosphoribulokinase activity, ATP binding;P:response to cold, defense response to bacterium, peptidyl-cysteine S-nitrosylation, biosynthetic process;C:in 8 components;BPOMFAV O.I. H.G. S.X.

Select a plant to compare co-expressed genes between species.
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Vitis_vinifera
Zea_mays

Back to the CoP portal site

Back to the KAGIANA project homepage