Co-expression analysis

Gene ID Ta.16953.1.A1_x_at
Gene name
Homology with ArabidopsisSimilar to At2g02850: ARPN (PLANTACYANIN) (HF=1e+0)
Module size 23 genes
NF 0.73
%ile 94.3

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.8393.40.96Ta.16953.1.A1_x_atCA606140--1e+0At2g02850ARPN (PLANTACYANIN)O.I.H.G.S.X.
0.9498.90.96Ta.21123.1.S1_s_atCK199555--2e+0At3g44735PSK1O.I.H.G.S.X.
0.8794.20.96TaAffx.31813.1.S1_x_atCA607079--6e+0At3g49570LSU3 (RESPONSE TO LOW SULFUR 3)O.I.H.G.S.X.
0.8593.80.97Ta.24626.1.S1_atCA637891--7e-1At1g0721030S ribosomal protein S18 familyO.I.H.G.S.X.
0.8393.40.96Ta.5503.1.S1_s_atBJ279289--5e+0At5g12050unknown proteinO.I.H.G.S.X.
0.8393.40.96TaAffx.31813.1.S1_atCA607079--6e+0At3g49570LSU3 (RESPONSE TO LOW SULFUR 3)O.I.H.G.S.X.
0.7991.30.96Ta.28353.1.S1_x_atBQ752795Nar2.2 protein-7e-2At5g50200WR3 (WOUND-RESPONSIVE 3)O.I.H.G.S.X.
0.7891.10.97TaAffx.64652.1.S1_atBJ283237--5e+0At2g11015unknown proteinO.I.H.G.S.X.
0.7690.10.96Ta.2758.1.S1_atAY293828.1--1e-6At5g43360PHT3 (PHOSPHATE TRANSPORTER 3)O.I.H.G.S.X.
0.7589.80.95TaAffx.56888.1.S1_atCA641739--4e+0At5g43510-O.I.H.G.S.X.
0.7589.80.96Ta.16953.1.A1_atCA606140--1e+0At2g02850ARPN (PLANTACYANIN)O.I.H.G.S.X.
0.7389.10.96TaAffx.84384.1.S1_atCA638101--6e+0At5g43650basic helix-loop-helix (bHLH) family proteinO.I.H.G.S.X.
0.7389.10.98Ta.25187.1.A1_atCA648378--5e+0At5g50930DNA bindingO.I.H.G.S.X.
0.7188.00.96Ta.18692.1.S1_atCA640672--3e+0At3g32130-O.I.H.G.S.X.
0.6886.50.97Ta.19183.2.S1_atCA647961--3e+1At5g21920YGGT family proteinO.I.H.G.S.X.
0.6786.30.96Ta.16983.2.S1_atCA642112--1e+0At5g60680unknown proteinO.I.H.G.S.X.
0.6684.10.96Ta.13950.1.S1_x_atCK199480--2e+0At1g62510protease inhibitor/seed storage/lipid transfer protein (LTP) family proteinO.I.H.G.S.X.
0.6684.10.96Ta.16811.1.S1_s_atCA613149o-methyltransferase-1e+0At1g74640unknown proteinO.I.H.G.S.X.
0.6383.10.96Ta.5458.1.S1_x_atCA615319--1e-1At2g22980serine-type carboxypeptidaseO.I.H.G.S.X.
0.6182.00.96TaAffx.56780.1.S1_atCA644423--1e+1At3g15110unknown proteinO.I.H.G.S.X.
0.6081.00.97Ta.5471.1.S1_a_atCK193699--1e+1At3g60540sec61beta family proteinO.I.H.G.S.X.
0.5879.20.96Ta.18672.1.S1_x_atCA603610--3e-1At1g07610MT1CO.I.H.G.S.X.
0.5678.60.95Ta.994.3.S1_x_atCA604487--3e-1At4g39250ATRL1 (ARABIDOPSIS RAD-LIKE 1)O.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
50.599.9GSM314261tissue type: seedling, root - rep2GSE12508Transcription patterns during wheat developmentLink to GEO
39.399.9GSM314262tissue type: seedling, root - rep3GSE12508Transcription patterns during wheat developmentLink to GEO
9.799.1GSM314260tissue type: seedling, root - rep1GSE12508Transcription patterns during wheat developmentLink to GEO
2.793.3GSM298070Leaf tissue of Paragon at 9 weeks post germination, biological rep 2GSE11774Expression data from cold treated wheat cultivarsLink to GEO
2.692.9GSM314256tissue type: germinating seed, root - rep3GSE12508Transcription patterns during wheat developmentLink to GEO
2.391.5GSM314254tissue type: germinating seed, root - rep1GSE12508Transcription patterns during wheat developmentLink to GEO
2.391.5GSM324487Si- B+ rep1GSE12936Transcriptomic analysis of the effect of silicon on wheat plants infected or uninfected with powdery mildewLink to GEO
2.190.3GSM139920Anther diplotene-anaphaseI rep2GSE6027Microarray expression analysis of meiosis and microsporogenesis in hexaploid bread wheatLink to GEO
2.190.3GSM139927Anther tetrads rep3GSE6027Microarray expression analysis of meiosis and microsporogenesis in hexaploid bread wheatLink to GEO
1.988.9GSM143504Thatcher_Lr34 (resistant), rust inoculated basal leaf, replication 3GSE6227Expression data from rust or mock inoculated, fully expanded flag leaf halvesLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Vitis_vinifera
Zea_mays



Back to the CoP portal site

Back to the KAGIANA project homepage