Co-expression analysis

Gene ID	Ta.16491.1.S1_at
Gene name
Homology with Arabidopsis	Similar to At3g07190: - (HF=9e+0)
Module size	20 genes
NF	0.36
%ile	58.1

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.72	88.3	0.85	Ta.16491.1.S1_at	CA607237	-	-	9e+0	At3g07190	-	O.I.	H.G.	S.X.	Please select
0.46	66.8	0.88	Ta.22743.1.S1_x_at	CA652933	-	-	7e+0	At4g12090	cornichon family protein	O.I.	H.G.	S.X.	Please select
0.44	64.5	0.91	Ta.3132.1.S1_s_at	BJ222897	-	-	1e+1	At4g28280	unknown protein	O.I.	H.G.	S.X.	Please select
0.44	64.5	0.90	Ta.7473.1.S1_at	CD872898	-	-	9e-3	At1g74800	galactosyltransferase family protein	O.I.	H.G.	S.X.	Please select
0.43	62.2	0.89	Ta.21029.1.S1_at	CA647347	-	-	2e-1	At3g02000	ROXY1	O.I.	H.G.	S.X.	Please select
0.42	60.9	0.90	Ta.13302.1.S1_at	BQ801428	-	-	5e+0	At5g15060	-	O.I.	H.G.	S.X.	Please select
0.41	59.6	0.91	Ta.28411.1.A1_at	BQ162281	-	-	3e-1	At4g37010	caltractin, putative / centrin, putative	O.I.	H.G.	S.X.	Please select
0.38	54.7	0.90	Ta.7022.2.S1_at	BF199967	-	-	5e-1	At1g19320	pathogenesis-related thaumatin family protein	O.I.	H.G.	S.X.	Please select
0.38	54.7	0.92	TaAffx.132026.1.A1_at	CK205559	-	-	5e+0	At5g13080	WRKY75	O.I.	H.G.	S.X.	Please select
0.36	51.9	0.88	Ta.1812.1.S1_at	CA732920	-	-	1e+0	At5g23680	sterile alpha motif (SAM) domain-containing protein	O.I.	H.G.	S.X.	Please select
0.35	49.8	0.86	Ta.20684.1.S1_at	CA604124	-	-	5e+0	At3g13970	APG12B (AUTOPHAGY 12 B)	O.I.	H.G.	S.X.	Please select
0.34	48.1	0.90	Ta.10500.1.S1_at	BJ297310	-	-	2e-5	At5g35200	epsin N-terminal homology (ENTH) domain-containing protein	O.I.	H.G.	S.X.	Please select
0.33	46.9	0.89	TaAffx.84007.1.S1_at	CA646483	-	-	1e+1	Atcg00560	-	O.I.	H.G.	S.X.	Please select
0.29	39.2	0.89	Ta.5994.1.S1_at	BJ293603	-	-	2e-1	At3g03760	LBD20 (LOB DOMAIN-CONTAINING PROTEIN 20)	O.I.	H.G.	S.X.	Please select
0.29	39.2	0.87	Ta.19463.1.S1_at	CA652153	-	-	2e+0	At1g20900	ESC (ESCAROLA)	O.I.	H.G.	S.X.	Please select
0.29	39.2	0.91	TaAffx.33753.2.S1_s_at	BQ168712	-	-	2e+1	At2g45630	oxidoreductase family protein	O.I.	H.G.	S.X.	Please select
0.28	39.2	0.88	Ta.13875.1.S1_at	AL830660	-	-	2e+0	At2g16700	ADF5 (ACTIN DEPOLYMERIZING FACTOR 5)	O.I.	H.G.	S.X.	Please select
0.27	35.6	0.88	Ta.23766.1.S1_a_at	CA663190	-	-	1e-2	At4g12380	unknown protein	O.I.	H.G.	S.X.	Please select
0.26	33.6	0.92	TaAffx.64732.1.S1_s_at	BJ284034	-	-	2e+0	At3g12070	geranylgeranyl transferase type II beta subunit, putative / RAB geranylgeranyltransferase beta subunit, putative	O.I.	H.G.	S.X.	Please select
0.22	27.1	0.90	TaAffx.65012.1.S1_at	BG607332	-	-	6e-4	At3g20580	COBL10 (COBRA-LIKE PROTEIN 10 PRECURSOR)	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
9.5	99.1	GSM314252	tissue type: germinating seed, coleoptile - rep2	GSE12508	Transcription patterns during wheat development
8.7	98.9	GSM314251	tissue type: germinating seed, coleoptile - rep1	GSE12508	Transcription patterns during wheat development
5.4	97.7	GSM298091	Leaf tissue of Solstice at 9 weeks post germination	GSE11774	Expression data from cold treated wheat cultivars
4.3	96.7	GSM343685	Wheat var. Kennedy_control_rep3	GSE13660	Gene expression analysis of the wheat response to infection by Fusarium pseudograminearum
3.9	96.1	GSM343687	Wheat var. Kennedy_Fp inoculated_rep2	GSE13660	Gene expression analysis of the wheat response to infection by Fusarium pseudograminearum
3.6	95.6	GSM314287	tissue type: 22 DAP endosperm - rep1	GSE12508	Transcription patterns during wheat development
3.2	94.8	GSM138169	genotype B68 developing seed at 5 days after anthesis, biological rep3	GSE5939	Wheat expression level polymorphism study 36 genotypes 2 biological reps from SB location
3.1	94.5	GSM138162	genotype E5 developing seed at 5 days after anthesis, biological rep1	GSE5939	Wheat expression level polymorphism study 36 genotypes 2 biological reps from SB location
3.0	94.3	GSM343688	Wheat var. Kennedy_Fp inoculated_rep3	GSE13660	Gene expression analysis of the wheat response to infection by Fusarium pseudograminearum
3.0	94.3	GSM138149	genotype F29 developing seed at 5 days after anthesis, biological rep3	GSE5939	Wheat expression level polymorphism study 36 genotypes 2 biological reps from SB location

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Vitis_vinifera

Zea_mays

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