Co-expression analysis

Gene ID	Ta.16453.1.S1_at
Gene name
Homology with Arabidopsis	Similar to At4g29650: cytidine deaminase 4 (CDA4) (desH) / cytidine aminohydrolase (HF=1e+0)
Module size	6 genes
NF	0.66
%ile	90.2

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.67	86.3	0.94	Ta.16453.1.S1_at	CA606648	-	-	1e+0	At4g29650	cytidine deaminase 4 (CDA4) (desH) / cytidine aminohydrolase	O.I.	H.G.	S.X.	Please select
0.77	90.8	0.95	Ta.19591.2.A1_a_at	CA651113	-	-	4e+0	At5g11500	unknown protein	O.I.	H.G.	S.X.	Please select
0.67	86.3	0.95	TaAffx.64914.1.S1_at	BJ270115	-	-	4e+0	At1g51915	cryptdin protein-related	O.I.	H.G.	S.X.	Please select
0.57	79.2	0.94	TaAffx.105943.1.S1_at	CA727514	-	-	2e+1	At5g07470	PMSR3 (PEPTIDEMETHIONINE SULFOXIDE REDUCTASE 3)	O.I.	H.G.	S.X.	Please select
0.50	72.4	0.95	TaAffx.108544.1.S1_x_at	CA663841	-	-	1e+1	At4g27270	quinone reductase family protein	O.I.	H.G.	S.X.	Please select
0.46	66.8	0.95	TaAffx.105981.1.S1_at	CA727065	-	-	3e-1	At4g11870	unknown protein	O.I.	H.G.	S.X.	Please select

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Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
21.4	99.7	GSM314261	tissue type: seedling, root - rep2	GSE12508	Transcription patterns during wheat development
16.4	99.6	GSM314262	tissue type: seedling, root - rep3	GSE12508	Transcription patterns during wheat development
15.2	99.6	GSM298070	Leaf tissue of Paragon at 9 weeks post germination, biological rep 2	GSE11774	Expression data from cold treated wheat cultivars
13.2	99.5	GSM298092	Crown tissue of Solstice at 3 weeks post germination	GSE11774	Expression data from cold treated wheat cultivars
7.3	98.6	GSM298067	Leaf tissue of Paragon at 5 weeks post germination, biological rep 1	GSE11774	Expression data from cold treated wheat cultivars
6.3	98.2	GSM314260	tissue type: seedling, root - rep1	GSE12508	Transcription patterns during wheat development
4.8	97.2	GSM250896	Tc_3dpi_inoculated_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
3.9	96.1	GSM250895	Tc_3dpi_mock_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
3.5	95.4	GSM111233	genotype H8 developing seed at 5 days after anthesis, biological rep2	GSE4935	wheat expression level polymorphism study 39 genotypes 2 biological reps
3.5	95.4	GSM314256	tissue type: germinating seed, root - rep3	GSE12508	Transcription patterns during wheat development

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Vitis_vinifera

Zea_mays

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