Co-expression analysis

Gene ID	Ta.16398.1.S1_at
Gene name
Homology with Arabidopsis	Similar to At2g31300: ARPC1B (ACTIN-RELATED PROTEIN C1B) (HF=3e-1)
Module size	24 genes
NF	0.36
%ile	57.6

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.73	89.1	0.97	Ta.16398.1.S1_at	CA605676	-	-	3e-1	At2g31300	ARPC1B (ACTIN-RELATED PROTEIN C1B)	O.I.	H.G.	S.X.	Please select
0.53	74.9	0.97	Ta.5338.1.S1_at	CD453726	-	-	5e-8	At3g13224	RNA recognition motif (RRM)-containing protein	O.I.	H.G.	S.X.	Please select
0.44	64.5	0.97	Ta.28732.1.S1_a_at	CA634142	-	-	6e-144	At5g19990	RPT6A (REGULATORY PARTICLE TRIPLE-A ATPASE 6A)	O.I.	H.G.	S.X.	Please select
0.43	62.2	0.97	Ta.12719.1.S1_at	CA608680	-	-	5e-1	At4g19180	nucleoside phosphatase family protein / GDA1/CD39 family protein	O.I.	H.G.	S.X.	Please select
0.41	59.6	0.97	Ta.9147.1.S1_at	BJ306360	-	-	2e-1	At2g42670	unknown protein	O.I.	H.G.	S.X.	Please select
0.41	59.6	0.97	Ta.21919.1.A1_at	CA708737	-	-	4e-4	At3g26850	-	O.I.	H.G.	S.X.	Please select
0.41	59.6	0.97	Ta.10105.1.S1_at	CA603317	-	-	7e-2	At2g44710	RNA recognition motif (RRM)-containing protein	O.I.	H.G.	S.X.	Please select
0.40	58.4	0.98	Ta.6588.1.A1_at	CK161154	-	-	1e-24	At5g06140	SNX1 (SORTING NEXIN 1)	O.I.	H.G.	S.X.	Please select
0.39	56.1	0.98	Ta.28597.1.S1_at	CF132965	-	-	1e-3	At5g21010	ATBPM5 (BTB-POZ and MATH domain 5)	O.I.	H.G.	S.X.	Please select
0.39	56.1	0.98	Ta.28199.2.A1_at	BJ319956	-	-	1e-3	At1g65660	SMP1 (SWELLMAP 1)	O.I.	H.G.	S.X.	Please select
0.38	54.7	0.98	Ta.11728.1.S1_at	BQ170684	-	-	2e-3	At1g10310	short-chain dehydrogenase/reductase (SDR) family protein	O.I.	H.G.	S.X.	Please select
0.38	54.7	0.97	Ta.766.1.S1_at	BJ272590	-	-	2e+0	At3g15680	zinc finger (Ran-binding) family protein	O.I.	H.G.	S.X.	Please select
0.35	49.8	0.97	Ta.27032.1.S1_at	BT009616.1	-	-	6e-8	At3g09100	mRNA capping enzyme family protein	O.I.	H.G.	S.X.	Please select
0.35	49.8	0.97	TaAffx.31311.1.S1_at	CD875309	-	-	6e-1	At4g18070	unknown protein	O.I.	H.G.	S.X.	Please select
0.35	49.8	0.98	Ta.2803.1.S1_at	BJ322551	-	-	1e+0	At5g46030	unknown protein	O.I.	H.G.	S.X.	Please select
0.32	44.4	0.97	Ta.3775.2.A1_at	BJ253915	-	-	1e+0	At4g37450	AGP18 (ARABINOGALACTAN PROTEIN 18)	O.I.	H.G.	S.X.	Please select
0.32	44.4	0.97	Ta.1176.1.S1_at	BQ166726	-	-	7e-1	At3g19380	PUB25 (PLANT U-BOX 25)	O.I.	H.G.	S.X.	Please select
0.29	39.2	0.97	Ta.19876.1.S1_at	BQ236614	-	-	2e-3	At5g05570	transducin family protein / WD-40 repeat family protein	O.I.	H.G.	S.X.	Please select
0.27	35.6	0.97	Ta.3448.1.S1_at	CK206881	-	-	6e-1	At3g04560	unknown protein	O.I.	H.G.	S.X.	Please select
0.26	33.6	0.98	Ta.9136.1.S1_at	CK200225	-	-	3e-1	At1g76420	CUC3 (CUP SHAPED COTYLEDON3)	O.I.	H.G.	S.X.	Please select
0.25	32.1	0.97	TaAffx.35707.1.S1_at	CA705245	-	-	7e-13	At5g63000	unknown protein	O.I.	H.G.	S.X.	Please select
0.20	24.0	0.98	Ta.6692.1.S1_at	CA741153	-	-	9e-10	At4g36960	RNA recognition motif (RRM)-containing protein	O.I.	H.G.	S.X.	Please select
0.19	22.4	0.98	Ta.6039.1.S1_at	CK168801	-	-	1e-8	At1g77180	chromatin protein family	O.I.	H.G.	S.X.	Please select
0.14	15.8	0.98	Ta.9301.1.S1_at	CK200112	-	-	4e-25	At1g14670	endomembrane protein 70, putative	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
5.6	97.8	GSM314277	tissue type: pistil, before anthesis - rep3	GSE12508	Transcription patterns during wheat development
5.6	97.8	GSM314276	tissue type: pistil, before anthesis - rep2	GSE12508	Transcription patterns during wheat development
5.4	97.7	GSM314275	tissue type: pistil, before anthesis - rep1	GSE12508	Transcription patterns during wheat development
4.6	97.0	GSM314273	tissue type: floral bracts, before anthesis - rep2	GSE12508	Transcription patterns during wheat development
4.5	96.9	GSM314274	tissue type: floral bracts, before anthesis - rep3	GSE12508	Transcription patterns during wheat development
3.1	94.5	GSM314272	tissue type: floral bracts, before anthesis - rep1	GSE12508	Transcription patterns during wheat development
2.9	94.0	GSM298070	Leaf tissue of Paragon at 9 weeks post germination, biological rep 2	GSE11774	Expression data from cold treated wheat cultivars
2.8	93.6	GSM139924	Anther telophaseI-telophaseII rep3	GSE6027	Microarray expression analysis of meiosis and microsporogenesis in hexaploid bread wheat
2.5	92.5	GSM139919	Anther diplotene-anaphaseI rep1	GSE6027	Microarray expression analysis of meiosis and microsporogenesis in hexaploid bread wheat
2.5	92.5	GSM139923	Anther telophaseI-telophaseII rep2	GSE6027	Microarray expression analysis of meiosis and microsporogenesis in hexaploid bread wheat

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Vitis_vinifera

Zea_mays

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