Co-expression analysis

Gene ID Ta.16223.1.S1_at
Gene name
Homology with ArabidopsisSimilar to At3g60966: protein binding / zinc ion binding (HF=4e+0)
Module size 6 genes
NF 0.42
%ile 66.8

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.5374.90.96Ta.16223.1.S1_atCA602882--4e+0At3g60966protein binding / zinc ion bindingO.I.H.G.S.X.
0.4464.50.97Ta.7345.1.S1_atCK158442--1e-11At3g62140unknown proteinO.I.H.G.S.X.
0.4260.90.97Ta.3544.2.S1_a_atBJ319650--8e-11At1g76860small nuclear ribonucleoprotein, putative / snRNP, putative / Sm protein, putativeO.I.H.G.S.X.
0.3346.90.97Ta.3307.2.A1_a_atBJ227454--5e-9At2g33730DEAD box RNA helicase, putativeO.I.H.G.S.X.
0.3142.70.97Ta.3544.3.S1_x_atBQ169086--4e-10At1g76860small nuclear ribonucleoprotein, putative / snRNP, putative / Sm protein, putativeO.I.H.G.S.X.
0.2939.20.97Ta.3307.2.A1_x_atBJ227454--5e-9At2g33730DEAD box RNA helicase, putativeO.I.H.G.S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
11.399.3GSM298092Crown tissue of Solstice at 3 weeks post germinationGSE11774Expression data from cold treated wheat cultivarsLink to GEO
5.897.9GSM298073Crown tissue of Paragon at 5 weeks post germination, biological rep 1GSE11774Expression data from cold treated wheat cultivarsLink to GEO
5.597.8GSM298071Crown tissue of Paragon at 3 weeks post germination, biological rep 1GSE11774Expression data from cold treated wheat cultivarsLink to GEO
5.097.4GSM298064Crown tissue of Harnesk at 9 weeks post germination, biological rep 2GSE11774Expression data from cold treated wheat cultivarsLink to GEO
4.997.3GSM298062Crown tissue of Harnesk at 5 weeks post germination, biological rep 2GSE11774Expression data from cold treated wheat cultivarsLink to GEO
4.797.1GSM298076Crown tissue of Paragon at 9 weeks post germination, biological rep 2GSE11774Expression data from cold treated wheat cultivarsLink to GEO
4.797.1GSM298072Crown tissue of Paragon at 3 weeks post germination, biological rep 2GSE11774Expression data from cold treated wheat cultivarsLink to GEO
4.697.0GSM298059Crown tissue of Harnesk at 3 weeks post germination, biological rep 1GSE11774Expression data from cold treated wheat cultivarsLink to GEO
4.596.9GSM298093Crown tissue of Solstice at 5 weeks post germinationGSE11774Expression data from cold treated wheat cultivarsLink to GEO
4.496.8GSM298061Crown tissue of Harnesk at 5 weeks post germination, biological rep 1GSE11774Expression data from cold treated wheat cultivarsLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Vitis_vinifera
Zea_mays



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