Co-expression analysis

Gene ID Ta.16082.2.S1_at
Gene name
Homology with ArabidopsisSimilar to At2g32100: OFP16 (ARABIDOPSIS THALIANA OVATE FAMILY PROTEIN 16) (HF=2e+0)
Module size 6 genes
NF 0.76
%ile 95.6

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.9198.20.94Ta.16082.2.S1_atCK211295--2e+0At2g32100OFP16 (ARABIDOPSIS THALIANA OVATE FAMILY PROTEIN 16)O.I.H.G.S.X.
0.9198.20.93Ta.16082.1.A1_atCA624333WRKY transcription factor-5e-1At3g06780glycine-rich proteinO.I.H.G.S.X.
0.9198.20.94Ta.16082.2.S1_x_atCK211295--2e+0At2g32100OFP16 (ARABIDOPSIS THALIANA OVATE FAMILY PROTEIN 16)O.I.H.G.S.X.
0.6786.30.95Ta.16082.1.A1_a_atCA624333WRKY transcription factor /// WRKY transcription factor-5e-1At3g06780glycine-rich proteinO.I.H.G.S.X.
0.5374.90.93Ta.29512.2.S1_x_atCA741393--3e-1At1g36095-O.I.H.G.S.X.
0.4058.40.94Ta.4189.2.S1_x_atCA626707--3e-1At1g12990glycosyl transferase family 17 proteinO.I.H.G.S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
8.398.8GSM143508Thatcher_Lr34 (resistant), mock inoculated basal leaf, replication 1GSE6227Expression data from rust or mock inoculated, fully expanded flag leaf halvesLink to GEO
7.798.7GSM143523Thatcher_Lr34 (susceptible), mock inoculated basal leaf, replication 3GSE6227Expression data from rust or mock inoculated, fully expanded flag leaf halvesLink to GEO
7.598.6GSM143509Thatcher_Lr34 (resistant), mock inoculated basal leaf, replication 2GSE6227Expression data from rust or mock inoculated, fully expanded flag leaf halvesLink to GEO
5.998.0GSM143525Thatcher_Lr34 (susceptible), mock inoculated distal leaf, replication 2GSE6227Expression data from rust or mock inoculated, fully expanded flag leaf halvesLink to GEO
5.697.8GSM143511Thatcher_Lr34 (resistant), mock inoculated distal leaf, replication 1GSE6227Expression data from rust or mock inoculated, fully expanded flag leaf halvesLink to GEO
5.497.7GSM143521Thatcher_Lr34 (susceptible), mock inoculated basal leaf, replication 1GSE6227Expression data from rust or mock inoculated, fully expanded flag leaf halvesLink to GEO
5.097.4GSM143510Thatcher_Lr34 (resistant), mock inoculated basal leaf, replication 3GSE6227Expression data from rust or mock inoculated, fully expanded flag leaf halvesLink to GEO
4.396.7GSM314267tissue type: seedling, leaf - rep2GSE12508Transcription patterns during wheat developmentLink to GEO
4.296.6GSM138184genotype C25 developing seed at 5 days after anthesis, biological rep1GSE5939Wheat expression level polymorphism study 36 genotypes 2 biological reps from SB locationLink to GEO
4.096.3GSM138169genotype B68 developing seed at 5 days after anthesis, biological rep3GSE5939Wheat expression level polymorphism study 36 genotypes 2 biological reps from SB locationLink to GEO

Inter-species module comparison

A co-expression module including the barley gene, Contig12005_at, orthologous to the query gene, Ta.16082.2.S1_at

VF%ileGene IDRepr. IDGene NameFunc.EvAGI codeArabidopsis gene nameO.I.H.G.S.X.Other DB
0.7187.1Contig12005_atAt2g32100--2e-4At5g24110WRKY30O.I.H.G.S.X.
0.4053.1Contig5051_atAt2g32100--9e-1At2g43350ATGPX3 (GLUTATHIONE PEROXIDASE 3)O.I.H.G.S.X.
0.1818.2HU12I24r_atAt2g32100--9e-1At5g42520ATBPC6O.I.H.G.S.X.
0.064.8Contig20130_atAt2g32100--2e+0At1g74860unknown proteinO.I.H.G.S.X.
0.043.4rbah59f07_s_atAt2g32100--4e+0At3g24160PMP (PUTATIVE TYPE 1 MEMBRANE PROTEIN)O.I.H.G.S.X.
0.043.4Contig3558_s_atAt2g32100--2e-15At1g24510T-complex protein 1 epsilon subunit, putative / TCP-1-epsilon, putative / chaperonin, putativeO.I.H.G.S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Oryza_sativa
Populus_trichocarpa
Vitis_vinifera
Zea_mays



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