Co-expression analysis

Gene ID Ta.16013.1.S1_at
Gene name
Homology with ArabidopsisSimilar to At5g65410: HB25 (HOMEOBOX PROTEIN 25) (HF=3e+0)
Module size 17 genes
NF 0.61
%ile 87.2

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.5779.20.62Ta.16013.1.S1_atCA595031--3e+0At5g65410HB25 (HOMEOBOX PROTEIN 25)O.I.H.G.S.X.
0.7288.30.74TaAffx.97964.1.S1_atAJ614106--2e+1At5g11690ATTIM17-3O.I.H.G.S.X.
0.6986.90.74TaAffx.97072.1.S1_atBQ803809--2e-1At3g44780unknown proteinO.I.H.G.S.X.
0.6786.30.68Ta.24957.2.A1_s_atCD910230--6e+0At3g57850-O.I.H.G.S.X.
0.6583.90.71Ta.9225.1.S1_x_atBJ290133--5e+0At5g61410RPEO.I.H.G.S.X.
0.6483.60.72Ta.9225.1.S1_atBJ290133--5e+0At5g61410RPEO.I.H.G.S.X.
0.6383.10.70TaAffx.87253.1.S1_atCA596311--2e+1At5g14070ROXY2O.I.H.G.S.X.
0.6383.10.73TaAffx.87253.3.S1_atCA595936--4e+0At1g0110060S acidic ribosomal protein P1 (RPP1A)O.I.H.G.S.X.
0.6081.00.69Ta.5861.1.S1_x_atBQ806955--6e+0At1g74440unknown proteinO.I.H.G.S.X.
0.6081.00.84Ta.4411.1.S1_atBQ169800--2e+0At2g14110-O.I.H.G.S.X.
0.5879.20.73Ta.22363.1.S1_atCA741556--1e+0At5g18080auxin-responsive protein, putativeO.I.H.G.S.X.
0.5879.20.72Ta.5886.1.S1_atCD917867--9e-2At4g28890protein binding / ubiquitin-protein ligase/ zinc ion bindingO.I.H.G.S.X.
0.5779.20.92Ta.4046.1.S1_a_atBJ257633--5e+0At2g28790osmotin-like protein, putativeO.I.H.G.S.X.
0.5576.80.91Ta.13454.1.S1_atBJ256474--2e+0At1g64355unknown proteinO.I.H.G.S.X.
0.5576.80.67TaAffx.9640.1.S1_s_atCA592916--2e+1At5g47870unknown proteinO.I.H.G.S.X.
0.5576.80.67Ta.22773.2.S1_x_atCA720455--1e+1At4g00850GIF3 (GRF1-INTERACTING FACTOR 3)O.I.H.G.S.X.
0.5173.00.75Ta.3956.1.A1_atBJ265103--1e+0At1g35181unknown proteinO.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
41.399.9GSM315202target strand labeled: Sense - rep1GSE12528Wheat "Chinese Spring" natural antisense transcription surveyLink to GEO
16.599.6GSM314279tissue type: anthers, before anthesis - rep2GSE12508Transcription patterns during wheat developmentLink to GEO
5.797.9GSM314280tissue type: anthers, before anthesis - rep3GSE12508Transcription patterns during wheat developmentLink to GEO
4.196.4GSM314289tissue type: 22 DAP endosperm - rep3GSE12508Transcription patterns during wheat developmentLink to GEO
4.096.3GSM298070Leaf tissue of Paragon at 9 weeks post germination, biological rep 2GSE11774Expression data from cold treated wheat cultivarsLink to GEO
4.096.3GSM139931Anther maturea nthers rep1GSE6027Microarray expression analysis of meiosis and microsporogenesis in hexaploid bread wheatLink to GEO
3.495.2GSM250900TcLr34_3dpi_inoculated_rep3GSE9915Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheatLink to GEO
3.194.5GSM143495Jupateco_Lr34 (resistant), mock inoculated distal leaf, replication 3GSE6227Expression data from rust or mock inoculated, fully expanded flag leaf halvesLink to GEO
2.994.0GSM314287tissue type: 22 DAP endosperm - rep1GSE12508Transcription patterns during wheat developmentLink to GEO
2.893.6GSM314264tissue type: seedling, crown - rep2GSE12508Transcription patterns during wheat developmentLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Vitis_vinifera
Zea_mays



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